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The map label for this gene is kdsA [H]

Identifier: 59711379

GI number: 59711379

Start: 841544

End: 842398

Strand: Direct

Name: kdsA [H]

Synonym: VF_0772

Alternate gene names: 59711379

Gene position: 841544-842398 (Clockwise)

Preceding gene: 59711378

Following gene: 59711385

Centisome position: 29.04

GC content: 38.95

Gene sequence:

>855_bases
ATGCAAAATCAAAAAACAGTAAAAATTGGCAATATCGATGTAGCGAATGATAAGCCGTTTACCTTATTTGCCGGTATGAA
CGTATTAGAATCTCGTGATCTTGCAATGCAAATCTGTGAGAAATACGTAGAAGTAACAGATAGATTAGGCATCCCGTACG
TATTTAAAGCGTCTTTTGATAAAGCAAACCGTTCATCTGTTCATTCATACCGTGGTCCTGGTATGGAAGAAGGTTTGAAA
ATTTTCCAAGAGCTAAAAGATACGTTTGGTGTGAAAATCATTACCGATATTCATACAGAAGCTCAAGCTCAACCTGTTGC
TGATGTGGTGGATGTAATTCAATTACCTGCATTTTTGGCACGTCAAACGGACCTTGTTGAAGCGATGGCAAAAACAGGTG
CTGTAATTAATGTGAAAAAACCACAGTTCATGAGCCCAGACCAAGTGGGTAATATCATTGATAAGTTCTCTGAGTGTGGT
AATGAAAACATCATTCTTTGTGAACGTGGTTCTTGCATGGGCTATGACAACCTAGTTGTTGATATGCTTGGTTTTGGTGT
AATGAAAAAAGCATCAAATGGCAGCCCAATTATCTTTGATGTGACGCATTCACTACAGAATCGCGATCCAAGTGGTAAAG
CATCTGGTGGTCGTCGTTCACAAACTGTTGAGTTAGCAAAAGCAGGTTTAGCGACGGGGATTGCTGGTCTATTTATTGAA
GCGCATCCAAACCCAGATAAAGCGTTATGTGATGGTCCTTCTGCATTGCCATTAGATCAATTAGAACCTTTCTTGAAGCA
AATGAAATCACTAGATGATTTAATTAAAGGCTTCGAGCACATCGATATTAAATAA

Upstream 100 bases:

>100_bases
TTGAACAGTGCCCAAATGACCCATCAGTTTTACTGATGAAAGAGCAAGTTCAATTATTACTTGAACAACACCCTACCGTT
CTCCATTAAGAGTGAAGATA

Downstream 100 bases:

>100_bases
TCGAGTTTTAAAGAATAAATAAAAAAGCCCAAGAGAGAATACTTTCTTGGGCTTTTTTATTATCTGAATGGTAAAAAATT
ATTCGTTTGGTTTAAACCAA

Product: 2-dehydro-3-deoxyphosphooctonate aldolase

Products: NA

Alternate protein names: 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; KDO-8-phosphate synthase; KDO 8-P synthase; KDOPS; Phospho-2-dehydro-3-deoxyoctonate aldolase [H]

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MQNQKTVKIGNIDVANDKPFTLFAGMNVLESRDLAMQICEKYVEVTDRLGIPYVFKASFDKANRSSVHSYRGPGMEEGLK
IFQELKDTFGVKIITDIHTEAQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFMSPDQVGNIIDKFSECG
NENIILCERGSCMGYDNLVVDMLGFGVMKKASNGSPIIFDVTHSLQNRDPSGKASGGRRSQTVELAKAGLATGIAGLFIE
AHPNPDKALCDGPSALPLDQLEPFLKQMKSLDDLIKGFEHIDIK

Sequences:

>Translated_284_residues
MQNQKTVKIGNIDVANDKPFTLFAGMNVLESRDLAMQICEKYVEVTDRLGIPYVFKASFDKANRSSVHSYRGPGMEEGLK
IFQELKDTFGVKIITDIHTEAQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFMSPDQVGNIIDKFSECG
NENIILCERGSCMGYDNLVVDMLGFGVMKKASNGSPIIFDVTHSLQNRDPSGKASGGRRSQTVELAKAGLATGIAGLFIE
AHPNPDKALCDGPSALPLDQLEPFLKQMKSLDDLIKGFEHIDIK
>Mature_284_residues
MQNQKTVKIGNIDVANDKPFTLFAGMNVLESRDLAMQICEKYVEVTDRLGIPYVFKASFDKANRSSVHSYRGPGMEEGLK
IFQELKDTFGVKIITDIHTEAQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFMSPDQVGNIIDKFSECG
NENIILCERGSCMGYDNLVVDMLGFGVMKKASNGSPIIFDVTHSLQNRDPSGKASGGRRSQTVELAKAGLATGIAGLFIE
AHPNPDKALCDGPSALPLDQLEPFLKQMKSLDDLIKGFEHIDIK

Specific function: Synthesis Of Kdo 8-P Which Is Required For Lipid A Maturation And Cellular Growth. [C]

COG id: COG2877

COG function: function code M; 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdsA family [H]

Homologues:

Organism=Escherichia coli, GI1787466, Length=279, Percent_Identity=78.494623655914, Blast_Score=466, Evalue=1e-133,

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006218
- InterPro:   IPR006269 [H]

Pfam domain/function: PF00793 DAHP_synth_1 [H]

EC number: =2.5.1.55 [H]

Molecular weight: Translated: 31018; Mature: 31018

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNQKTVKIGNIDVANDKPFTLFAGMNVLESRDLAMQICEKYVEVTDRLGIPYVFKASFD
CCCCCEEEECCEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
KANRSSVHSYRGPGMEEGLKIFQELKDTFGVKIITDIHTEAQAQPVADVVDVIQLPAFLA
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEEECCCHHCCCHHHHHHHHHHHHHHHH
RQTDLVEAMAKTGAVINVKKPQFMSPDQVGNIIDKFSECGNENIILCERGSCMGYDNLVV
HHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHH
DMLGFGVMKKASNGSPIIFDVTHSLQNRDPSGKASGGRRSQTVELAKAGLATGIAGLFIE
HHHHHHHHHCCCCCCCEEEEECHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEE
AHPNPDKALCDGPSALPLDQLEPFLKQMKSLDDLIKGFEHIDIK
ECCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQNQKTVKIGNIDVANDKPFTLFAGMNVLESRDLAMQICEKYVEVTDRLGIPYVFKASFD
CCCCCEEEECCEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
KANRSSVHSYRGPGMEEGLKIFQELKDTFGVKIITDIHTEAQAQPVADVVDVIQLPAFLA
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEEECCCHHCCCHHHHHHHHHHHHHHHH
RQTDLVEAMAKTGAVINVKKPQFMSPDQVGNIIDKFSECGNENIILCERGSCMGYDNLVV
HHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHH
DMLGFGVMKKASNGSPIIFDVTHSLQNRDPSGKASGGRRSQTVELAKAGLATGIAGLFIE
HHHHHHHHHCCCCCCCEEEEECHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEE
AHPNPDKALCDGPSALPLDQLEPFLKQMKSLDDLIKGFEHIDIK
ECCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA