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The map label for this gene is lpsD [H]

Identifier: 59710740

GI number: 59710740

Start: 150368

End: 151396

Strand: Reverse

Name: lpsD [H]

Synonym: VF_0133

Alternate gene names: 59710740

Gene position: 151396-150368 (Counterclockwise)

Preceding gene: 59710741

Following gene: 59710739

Centisome position: 5.22

GC content: 41.5

Gene sequence:

>1029_bases
ATGAAAATTTATCATATTAACCTTGCTCGTGGTTTTAGCGGTGGAGAGCAACAAACTCTCGCTCTCATTAAACAGCACCA
AAAACAGCAACAAGAAATAGCAGTTATCGCTTTAGCTAATAGCCCTTTTCATCAAGCCGTATCTGATTTAGGTTGTGAAG
TCATTACGGTTCGACATTATCTATTAGGCCACACGATTTCTCTTCCAAAAGATGCCGTTCTCCATGTTCATGAAGGGCAT
GCTATCTATTGGGCTGCAATTCAGCATAAAGTAAGCCAAACACCTTATATTATTACTCGACGCTTAGATAACCCGATTAA
GAAGAAATGGCTCACGACTTTTGCGTATTCTAATGCCGCAGCCATTGTTGGGATCAGCACTTGCGTTTCTGAGGTAGTAC
GAACACGCCTTCCACAACAACATATTGTGACGATTCCTGATTCACCCGTGATTTATCCGGTCAATCATTCTGAAGTCGCC
AATATTAGGGAGCGATTTAAGGATAAATTTTTGGTCATTCAAGCTGGTAATATGATCCCTCATAAAGGGTTTGATGTCAC
GGTTAACGCCGCAATGCGACTGAAAGATCCTAATGTTCATCTCTGTTTATTAGGGGATGGGAAACAACGTTCTGAACTAG
AAGAACAAGCTTCAGGATTAGCGAATATTTCATTTATGGGTCGCCAACATAATATGGGTGACTGGTTTGCGGCTGCCGAT
TTGTTGATCCACCCTTCTTATACTGAAGGACTCGGGTCTGTGATTTTAGAAGGTATGAATGCTGGACTTCCTGCTATTGG
TTCGCATGCAGGAGGGATCCCTGACATTATCGAACATGATAAATCAGGACTACTTATCGAGCCGGGTAATTCTGTAGAAC
TGGCCGAAAACATTGAAAAAATAGCCAATGATGCCACGCTAAAAGAACGCTTAATTGAAGGAGGACGAGAAAAATTAACC
TCCTTTATGATTGAGCATACTGCGGCTCTGTATTTCAAGGTTTATCAACGAGCTTTACAACATGACTAA

Upstream 100 bases:

>100_bases
GACATGGCTTGCTATTAGCAATGTTAAGTGCCAGTGTGACGTTTAATCGCTATGCAGATTTATGGTTACGTGATTACAAT
AAATCCAACAAGGAATAATA

Downstream 100 bases:

>100_bases
ATTAACGCTTTATCCCGGTACGTTTGATCCTATCACTAATGGACATTTGGATTTAATTAAACGTTCTGCCTCCATGTTTG
ATCACATCATTGTTGCAGTG

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MKIYHINLARGFSGGEQQTLALIKQHQKQQQEIAVIALANSPFHQAVSDLGCEVITVRHYLLGHTISLPKDAVLHVHEGH
AIYWAAIQHKVSQTPYIITRRLDNPIKKKWLTTFAYSNAAAIVGISTCVSEVVRTRLPQQHIVTIPDSPVIYPVNHSEVA
NIRERFKDKFLVIQAGNMIPHKGFDVTVNAAMRLKDPNVHLCLLGDGKQRSELEEQASGLANISFMGRQHNMGDWFAAAD
LLIHPSYTEGLGSVILEGMNAGLPAIGSHAGGIPDIIEHDKSGLLIEPGNSVELAENIEKIANDATLKERLIEGGREKLT
SFMIEHTAALYFKVYQRALQHD

Sequences:

>Translated_342_residues
MKIYHINLARGFSGGEQQTLALIKQHQKQQQEIAVIALANSPFHQAVSDLGCEVITVRHYLLGHTISLPKDAVLHVHEGH
AIYWAAIQHKVSQTPYIITRRLDNPIKKKWLTTFAYSNAAAIVGISTCVSEVVRTRLPQQHIVTIPDSPVIYPVNHSEVA
NIRERFKDKFLVIQAGNMIPHKGFDVTVNAAMRLKDPNVHLCLLGDGKQRSELEEQASGLANISFMGRQHNMGDWFAAAD
LLIHPSYTEGLGSVILEGMNAGLPAIGSHAGGIPDIIEHDKSGLLIEPGNSVELAENIEKIANDATLKERLIEGGREKLT
SFMIEHTAALYFKVYQRALQHD
>Mature_342_residues
MKIYHINLARGFSGGEQQTLALIKQHQKQQQEIAVIALANSPFHQAVSDLGCEVITVRHYLLGHTISLPKDAVLHVHEGH
AIYWAAIQHKVSQTPYIITRRLDNPIKKKWLTTFAYSNAAAIVGISTCVSEVVRTRLPQQHIVTIPDSPVIYPVNHSEVA
NIRERFKDKFLVIQAGNMIPHKGFDVTVNAAMRLKDPNVHLCLLGDGKQRSELEEQASGLANISFMGRQHNMGDWFAAAD
LLIHPSYTEGLGSVILEGMNAGLPAIGSHAGGIPDIIEHDKSGLLIEPGNSVELAENIEKIANDATLKERLIEGGREKLT
SFMIEHTAALYFKVYQRALQHD

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Escherichia coli, GI1790061, Length=284, Percent_Identity=27.4647887323944, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 37840; Mature: 37840

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIYHINLARGFSGGEQQTLALIKQHQKQQQEIAVIALANSPFHQAVSDLGCEVITVRHY
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHCCCCCEEHHHH
LLGHTISLPKDAVLHVHEGHAIYWAAIQHKVSQTPYIITRRLDNPIKKKWLTTFAYSNAA
HHCCCCCCCCCCEEEEECCCEEEEEEHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCH
AIVGISTCVSEVVRTRLPQQHIVTIPDSPVIYPVNHSEVANIRERFKDKFLVIQAGNMIP
HEEEHHHHHHHHHHHHCCCCCEEECCCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCCC
HKGFDVTVNAAMRLKDPNVHLCLLGDGKQRSELEEQASGLANISFMGRQHNMGDWFAAAD
CCCCCEEEEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHH
LLIHPSYTEGLGSVILEGMNAGLPAIGSHAGGIPDIIEHDKSGLLIEPGNSVELAENIEK
EEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCHHHHHHHH
IANDATLKERLIEGGREKLTSFMIEHTAALYFKVYQRALQHD
HHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIYHINLARGFSGGEQQTLALIKQHQKQQQEIAVIALANSPFHQAVSDLGCEVITVRHY
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHCCCCCEEHHHH
LLGHTISLPKDAVLHVHEGHAIYWAAIQHKVSQTPYIITRRLDNPIKKKWLTTFAYSNAA
HHCCCCCCCCCCEEEEECCCEEEEEEHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCH
AIVGISTCVSEVVRTRLPQQHIVTIPDSPVIYPVNHSEVANIRERFKDKFLVIQAGNMIP
HEEEHHHHHHHHHHHHCCCCCEEECCCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCCC
HKGFDVTVNAAMRLKDPNVHLCLLGDGKQRSELEEQASGLANISFMGRQHNMGDWFAAAD
CCCCCEEEEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHH
LLIHPSYTEGLGSVILEGMNAGLPAIGSHAGGIPDIIEHDKSGLLIEPGNSVELAENIEK
EEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCHHHHHHHH
IANDATLKERLIEGGREKLTSFMIEHTAALYFKVYQRALQHD
HHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]