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The map label for this gene is yibD [C]

Identifier: 59710741

GI number: 59710741

Start: 151399

End: 152184

Strand: Reverse

Name: yibD [C]

Synonym: VF_0134

Alternate gene names: 59710741

Gene position: 152184-151399 (Counterclockwise)

Preceding gene: 59710742

Following gene: 59710740

Centisome position: 5.25

GC content: 42.11

Gene sequence:

>786_bases
ATGACTCACTCTTCGACGCCGACGTTAGCGGTAGCACTTATCGTAAAAAATGAAGCGAAGCATTTACAAGCCTGTTTAGA
AACCGTACAAGGCTGGGTGGATGAAATCGTGATTCTCGATTCTGGCAGCACGGATGAAACAGAAAGCATTGCTCGTCAAT
TTACCGATCGTTTTTTTGTAAACACCGAATGGCCGGGATTTGGTAAGCAGCGTCAGTTAGCACAGCAATATGTGACAGCC
GATTACGTGCTGTGGTTGGATGCCGATGAGCGAGTTACGCCTGAGTTAAAAGAAGATATTTTGACGGCGGTAAAAGCCAA
TAAACCGAATGTGGCGTATAAGATAAATCGTCTTAGCTCTGCCTTTGGGAAGTTCATTAAGCACTCTGGTTGGTCGCCAG
ATTGGGTGGTGCGTTTATATAAAGTGAATGACATGGCTTATAATGATGCTTTGGTTCATGAAAGTGTGTCAGTCCCTGAT
GGCGTTCAAGTGGCCCCATTATCCGGTCGTTTACTGCATTTTACGTACGACGTTTTACATCAATACAATGCGAAAAATGT
TATGTACATTAAGTCATGGGTTGATCAGCGAGAAGGAAAAAAGAAAGGCTCATTAAGTGGTGCTTTTTTCCATGGTTTCT
TTTGCTTTATTCGCATGTACATTCTAAAACGTGGTTTTTTAGATGGCCGACATGGCTTGCTATTAGCAATGTTAAGTGCC
AGTGTGACGTTTAATCGCTATGCAGATTTATGGTTACGTGATTACAATAAATCCAACAAGGAATAA

Upstream 100 bases:

>100_bases
ATGGAGTACGCGTGTTAAAGGTGACCATATTATGCAAGACATTACGCTTGATATGGTAAAAGAGGCTTTTTTACGTTTAC
GCCATCAATAAGGATACGTC

Downstream 100 bases:

>100_bases
TAATGAAAATTTATCATATTAACCTTGCTCGTGGTTTTAGCGGTGGAGAGCAACAAACTCTCGCTCTCATTAAACAGCAC
CAAAAACAGCAACAAGAAAT

Product: alpha-L-glycero-D-manno-heptose beta-1,4-glucosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTHSSTPTLAVALIVKNEAKHLQACLETVQGWVDEIVILDSGSTDETESIARQFTDRFFVNTEWPGFGKQRQLAQQYVTA
DYVLWLDADERVTPELKEDILTAVKANKPNVAYKINRLSSAFGKFIKHSGWSPDWVVRLYKVNDMAYNDALVHESVSVPD
GVQVAPLSGRLLHFTYDVLHQYNAKNVMYIKSWVDQREGKKKGSLSGAFFHGFFCFIRMYILKRGFLDGRHGLLLAMLSA
SVTFNRYADLWLRDYNKSNKE

Sequences:

>Translated_261_residues
MTHSSTPTLAVALIVKNEAKHLQACLETVQGWVDEIVILDSGSTDETESIARQFTDRFFVNTEWPGFGKQRQLAQQYVTA
DYVLWLDADERVTPELKEDILTAVKANKPNVAYKINRLSSAFGKFIKHSGWSPDWVVRLYKVNDMAYNDALVHESVSVPD
GVQVAPLSGRLLHFTYDVLHQYNAKNVMYIKSWVDQREGKKKGSLSGAFFHGFFCFIRMYILKRGFLDGRHGLLLAMLSA
SVTFNRYADLWLRDYNKSNKE
>Mature_260_residues
THSSTPTLAVALIVKNEAKHLQACLETVQGWVDEIVILDSGSTDETESIARQFTDRFFVNTEWPGFGKQRQLAQQYVTAD
YVLWLDADERVTPELKEDILTAVKANKPNVAYKINRLSSAFGKFIKHSGWSPDWVVRLYKVNDMAYNDALVHESVSVPDG
VQVAPLSGRLLHFTYDVLHQYNAKNVMYIKSWVDQREGKKKGSLSGAFFHGFFCFIRMYILKRGFLDGRHGLLLAMLSAS
VTFNRYADLWLRDYNKSNKE

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 29823; Mature: 29692

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHSSTPTLAVALIVKNEAKHLQACLETVQGWVDEIVILDSGSTDETESIARQFTDRFFV
CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHEEE
NTEWPGFGKQRQLAQQYVTADYVLWLDADERVTPELKEDILTAVKANKPNVAYKINRLSS
ECCCCCCCHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHH
AFGKFIKHSGWSPDWVVRLYKVNDMAYNDALVHESVSVPDGVQVAPLSGRLLHFTYDVLH
HHHHHHHCCCCCHHHEEEEEEECCCHHCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHH
QYNAKNVMYIKSWVDQREGKKKGSLSGAFFHGFFCFIRMYILKRGFLDGRHGLLLAMLSA
HCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SVTFNRYADLWLRDYNKSNKE
HHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
THSSTPTLAVALIVKNEAKHLQACLETVQGWVDEIVILDSGSTDETESIARQFTDRFFV
CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHEEE
NTEWPGFGKQRQLAQQYVTADYVLWLDADERVTPELKEDILTAVKANKPNVAYKINRLSS
ECCCCCCCHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHH
AFGKFIKHSGWSPDWVVRLYKVNDMAYNDALVHESVSVPDGVQVAPLSGRLLHFTYDVLH
HHHHHHHCCCCCHHHEEEEEEECCCHHCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHH
QYNAKNVMYIKSWVDQREGKKKGSLSGAFFHGFFCFIRMYILKRGFLDGRHGLLLAMLSA
HCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SVTFNRYADLWLRDYNKSNKE
HHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]