Click here to switch to the map view.

The map label for this gene is slmA [H]

Identifier: 172087641

GI number: 172087641

Start: 142382

End: 142972

Strand: Reverse

Name: slmA [H]

Synonym: VF_0124

Alternate gene names: 172087641

Gene position: 142972-142382 (Counterclockwise)

Preceding gene: 59710732

Following gene: 59710729

Centisome position: 4.93

GC content: 39.59

Gene sequence:

>591_bases
ATGGCGACCCCAAGAAAACCAAATCGTCGTGATGAAATACTACAAGCTTTAGCTGAAATGCTAGAGTCCAATGAAGGTGC
TGCTCGCATTACCACAGCCAAATTAGCAAAACAGGTTGGTGTATCAGAAGCTGCGTTATATCGCCATTTCCCAAGCAAAG
CCAAAATGTTTGAAGGCTTAATTGAATTTATTGAAGAATCTATTTTTTCGCGTGTTAACCGCATTCTTGAAGATGAAAAA
GATACTTTAAAACGTATTGAGCTATTATTAAAACTTCTGCTCGCCTTTGCTGAACGTAACCCGGGATTAACTCGAATTAT
GACAGGCCATGCGCTGATGTTTGAAAATGAGCGCTTAAGAAGCCGCATCAATCAAATATTTGAGCGTATTGAACTTCAAT
TCAAACAAATCTTACGTGAACGTAAATTACGTGAAGGGAAAGCATTCCCAATTGATGAAAGTATTTTAGCCGCTCAGCTT
GTGGGTCAAGTCGAGGGGAGTTTCTGTCGTTTTGTTCGTTCTGATTTTAAATATCAACCGACTGAAAACTTTAACGAGTA
TTGGGCGCTACTCAGTGCTCAGATCCAATAA

Upstream 100 bases:

>100_bases
GATATTTCAACGCTCCCCTCTGAATTCTGCAAGCGAAGCGATCTGAACTCTTATAAAAACAGCTCCACAAAAAATAATAA
AAAATGACAAAGGAACCGTA

Downstream 100 bases:

>100_bases
TTAATTAGATAAAATAGGCTCACGATGTCAAAGTATCCAGCACCTAAATTCTCTAGCGCTCTTCTACACCCTAAATATTG
GGGGGTATGGTTTGGATTCG

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MATPRKPNRRDEILQALAEMLESNEGAARITTAKLAKQVGVSEAALYRHFPSKAKMFEGLIEFIEESIFSRVNRILEDEK
DTLKRIELLLKLLLAFAERNPGLTRIMTGHALMFENERLRSRINQIFERIELQFKQILRERKLREGKAFPIDESILAAQL
VGQVEGSFCRFVRSDFKYQPTENFNEYWALLSAQIQ

Sequences:

>Translated_196_residues
MATPRKPNRRDEILQALAEMLESNEGAARITTAKLAKQVGVSEAALYRHFPSKAKMFEGLIEFIEESIFSRVNRILEDEK
DTLKRIELLLKLLLAFAERNPGLTRIMTGHALMFENERLRSRINQIFERIELQFKQILRERKLREGKAFPIDESILAAQL
VGQVEGSFCRFVRSDFKYQPTENFNEYWALLSAQIQ
>Mature_195_residues
ATPRKPNRRDEILQALAEMLESNEGAARITTAKLAKQVGVSEAALYRHFPSKAKMFEGLIEFIEESIFSRVNRILEDEKD
TLKRIELLLKLLLAFAERNPGLTRIMTGHALMFENERLRSRINQIFERIELQFKQILRERKLREGKAFPIDESILAAQLV
GQVEGSFCRFVRSDFKYQPTENFNEYWALLSAQIQ

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=191, Percent_Identity=63.3507853403141, Blast_Score=250, Evalue=5e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22791; Mature: 22660

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPRKPNRRDEILQALAEMLESNEGAARITTAKLAKQVGVSEAALYRHFPSKAKMFEGL
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHH
IEFIEESIFSRVNRILEDEKDTLKRIELLLKLLLAFAERNPGLTRIMTGHALMFENERLR
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHH
SRINQIFERIELQFKQILRERKLREGKAFPIDESILAAQLVGQVEGSFCRFVRSDFKYQP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TENFNEYWALLSAQIQ
CCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ATPRKPNRRDEILQALAEMLESNEGAARITTAKLAKQVGVSEAALYRHFPSKAKMFEGL
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHH
IEFIEESIFSRVNRILEDEKDTLKRIELLLKLLLAFAERNPGLTRIMTGHALMFENERLR
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHH
SRINQIFERIELQFKQILRERKLREGKAFPIDESILAAQLVGQVEGSFCRFVRSDFKYQP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TENFNEYWALLSAQIQ
CCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA