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The map label for this gene is yidC [H]

Identifier: 58617041

GI number: 58617041

Start: 517378

End: 519105

Strand: Reverse

Name: yidC [H]

Synonym: ERGA_CDS_03140

Alternate gene names: 58617041

Gene position: 519105-517378 (Counterclockwise)

Preceding gene: 58617042

Following gene: 58617040

Centisome position: 34.61

GC content: 27.08

Gene sequence:

>1728_bases
ATGTTAGAAATTCGCAATTTAGTGTTCGCTGTCGTTTTATCTGTATTGATTATGATGGGGTGGAGGCTTGTATATGAGAA
ATTTTTTACAGTACAACATGTTGTAGAAGATGAAGACTCTAGCTCCATGATTCCAGAAATCGATAATGTACTCACATATA
GGTCACGTAATGAAATTATAGATAGTACTCAAAATCTACGAGTTAAATTATCAAACAAAGAAATTAATGGATCTATTTCA
TTAAAAGGTGCGCAACTTGATGATCTAGTATTTAAAAATTACCATATTACACCAGATAATAGCTCTGATGGGATAATATT
ATTATCACCAGAAAATACAGAAGGTGTTTACTTTATAGAGTTTGGATGGATAGATCCACAACATAAAATAGTAGTACCAA
ATCAACTATCCACCTGGACATCAGATAAATCTGTTCTATCTCCAAACAATACTGTTACCTTAACATGGAACAATCAACAA
GGGGTGATATTTCAAATAAAAGTTACTCTTGATGATTATTATATGTTTAAAATAGAACAAATTATCATCAATAATACAGA
TAATGTAGTTAATTTAATTCCTTACGGGAGGATTAATAGAGCAAGACATACTACAGAAAAATCTTATTGGATTTCACATG
AAGGAGCTGTAGGAAGCTTTGGATATACATTAAAAGAGTGGACATATAAAAATATAATAAAAGAAAGGAATATTAAAATC
AGTCAACAAAATACTGATGATAATCAGTGGGTTGGTATTGCAGATAAGTATTGGTTCACAGCATTAATACCAAACATATT
ACAAAAAAAGAGTAAGTTAAGCTTTCATGTAAAACATGGTAAATATAATAATGAAGATCGTTTTCAAGTAGATTTTAGCC
ATGACAGTTACAGTGCTTATCCAAATAAAACAGCAAGTAGTACTAGTTATTTATTTGCTGGGGCTAAAGAACTAAAACTA
TTAGATAAGTACAAAAAAGATTTAAATATTTCTTTATTTGATAAAGCTGTAGATTTTGGAATACTTTATTTTATTACAAA
ACCTGTCTTCCTTTTATTAGAATATTTTTATGATCTTATAGGAAATTTTGGTTTAGCTATACTATTACTTACAATAGTAA
TAAAGCTCATAATGTTCCCTCTATCTTACAAGTCTTATGTTTCAATGTTCAAATTAAAATATTTGCAACCAGAAATCTTA
AAAATAAAAGAATTATACAAAAATGATAATACTAAAATGAGCAAAGAAGTATCACTTTTATTTAAAAAGAATGATGTTAG
TCCCATGTCTGGATTTATTCCTATACTAATACAAATACCAGTCTTTTTTGCATTATACAAAGTATTATTTGTAACAATTG
AAATGAGACATGCCCCTTTTTATTTATGGGTAAAAGATTTATCAAATTTTGATACTGCAAATGTTTTAACTCTATTTGGT
TTATTAAATTTTAATCCTCCAATTTGTATTGGGATTTTACCTGTAATATTAGGAATTACCATGATTATTCAACAAAAAAT
GAATACCTCTACTCATTCCTCTCAAGATCAAGATAAAATTCAAGCAAGTTTTATAAAATTCTTACCATATGTTTTCATAT
TTATATTTTCTTCATTTCCAACTGGGCTAATTATTTATTGGATATGTAGTAATTCTATTACTATAATACAACAATTAATA
ATAAAAGCTTATATAGGAAGAAAGTTTAATTTAAAACATGATTTATAA

Upstream 100 bases:

>100_bases
TAAACAAATAAATACAGTTAAAATATATTTAATATTGCTTTATTGATTTAAAAAAAGCTATATGCTACACTGAAAATCAT
TAAGTACTCACTTATACAAT

Downstream 100 bases:

>100_bases
TAACTAAAAAAGAGTTAATATGCCTAACAATAAAATAAAAATGCTAGTTGTAGTATCACAATTCTATCCTGAAATTACAG
AACTTATGTTAAACGCAGCA

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 575; Mature: 575

Protein sequence:

>575_residues
MLEIRNLVFAVVLSVLIMMGWRLVYEKFFTVQHVVEDEDSSSMIPEIDNVLTYRSRNEIIDSTQNLRVKLSNKEINGSIS
LKGAQLDDLVFKNYHITPDNSSDGIILLSPENTEGVYFIEFGWIDPQHKIVVPNQLSTWTSDKSVLSPNNTVTLTWNNQQ
GVIFQIKVTLDDYYMFKIEQIIINNTDNVVNLIPYGRINRARHTTEKSYWISHEGAVGSFGYTLKEWTYKNIIKERNIKI
SQQNTDDNQWVGIADKYWFTALIPNILQKKSKLSFHVKHGKYNNEDRFQVDFSHDSYSAYPNKTASSTSYLFAGAKELKL
LDKYKKDLNISLFDKAVDFGILYFITKPVFLLLEYFYDLIGNFGLAILLLTIVIKLIMFPLSYKSYVSMFKLKYLQPEIL
KIKELYKNDNTKMSKEVSLLFKKNDVSPMSGFIPILIQIPVFFALYKVLFVTIEMRHAPFYLWVKDLSNFDTANVLTLFG
LLNFNPPICIGILPVILGITMIIQQKMNTSTHSSQDQDKIQASFIKFLPYVFIFIFSSFPTGLIIYWICSNSITIIQQLI
IKAYIGRKFNLKHDL

Sequences:

>Translated_575_residues
MLEIRNLVFAVVLSVLIMMGWRLVYEKFFTVQHVVEDEDSSSMIPEIDNVLTYRSRNEIIDSTQNLRVKLSNKEINGSIS
LKGAQLDDLVFKNYHITPDNSSDGIILLSPENTEGVYFIEFGWIDPQHKIVVPNQLSTWTSDKSVLSPNNTVTLTWNNQQ
GVIFQIKVTLDDYYMFKIEQIIINNTDNVVNLIPYGRINRARHTTEKSYWISHEGAVGSFGYTLKEWTYKNIIKERNIKI
SQQNTDDNQWVGIADKYWFTALIPNILQKKSKLSFHVKHGKYNNEDRFQVDFSHDSYSAYPNKTASSTSYLFAGAKELKL
LDKYKKDLNISLFDKAVDFGILYFITKPVFLLLEYFYDLIGNFGLAILLLTIVIKLIMFPLSYKSYVSMFKLKYLQPEIL
KIKELYKNDNTKMSKEVSLLFKKNDVSPMSGFIPILIQIPVFFALYKVLFVTIEMRHAPFYLWVKDLSNFDTANVLTLFG
LLNFNPPICIGILPVILGITMIIQQKMNTSTHSSQDQDKIQASFIKFLPYVFIFIFSSFPTGLIIYWICSNSITIIQQLI
IKAYIGRKFNLKHDL
>Mature_575_residues
MLEIRNLVFAVVLSVLIMMGWRLVYEKFFTVQHVVEDEDSSSMIPEIDNVLTYRSRNEIIDSTQNLRVKLSNKEINGSIS
LKGAQLDDLVFKNYHITPDNSSDGIILLSPENTEGVYFIEFGWIDPQHKIVVPNQLSTWTSDKSVLSPNNTVTLTWNNQQ
GVIFQIKVTLDDYYMFKIEQIIINNTDNVVNLIPYGRINRARHTTEKSYWISHEGAVGSFGYTLKEWTYKNIIKERNIKI
SQQNTDDNQWVGIADKYWFTALIPNILQKKSKLSFHVKHGKYNNEDRFQVDFSHDSYSAYPNKTASSTSYLFAGAKELKL
LDKYKKDLNISLFDKAVDFGILYFITKPVFLLLEYFYDLIGNFGLAILLLTIVIKLIMFPLSYKSYVSMFKLKYLQPEIL
KIKELYKNDNTKMSKEVSLLFKKNDVSPMSGFIPILIQIPVFFALYKVLFVTIEMRHAPFYLWVKDLSNFDTANVLTLFG
LLNFNPPICIGILPVILGITMIIQQKMNTSTHSSQDQDKIQASFIKFLPYVFIFIFSSFPTGLIIYWICSNSITIIQQLI
IKAYIGRKFNLKHDL

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790140, Length=337, Percent_Identity=31.1572700296736, Blast_Score=189, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019998
- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 66574; Mature: 66574

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIRNLVFAVVLSVLIMMGWRLVYEKFFTVQHVVEDEDSSSMIPEIDNVLTYRSRNEII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHH
DSTQNLRVKLSNKEINGSISLKGAQLDDLVFKNYHITPDNSSDGIILLSPENTEGVYFIE
CCCCCEEEEEECCCCCCEEEEECCCHHHHHCCCEEECCCCCCCCEEEECCCCCCCEEEEE
FGWIDPQHKIVVPNQLSTWTSDKSVLSPNNTVTLTWNNQQGVIFQIKVTLDDYYMFKIEQ
ECCCCCCCEEEECCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEEEEECCEEEEEEEE
IIINNTDNVVNLIPYGRINRARHTTEKSYWISHEGAVGSFGYTLKEWTYKNIIKERNIKI
EEECCCCCEEEECCCCCCCHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEE
SQQNTDDNQWVGIADKYWFTALIPNILQKKSKLSFHVKHGKYNNEDRFQVDFSHDSYSAY
EECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEECCCCCCCC
PNKTASSTSYLFAGAKELKLLDKYKKDLNISLFDKAVDFGILYFITKPVFLLLEYFYDLI
CCCCCCCCEEEECCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
GNFGLAILLLTIVIKLIMFPLSYKSYVSMFKLKYLQPEILKIKELYKNDNTKMSKEVSLL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHEEEE
FKKNDVSPMSGFIPILIQIPVFFALYKVLFVTIEMRHAPFYLWVKDLSNFDTANVLTLFG
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCCHHHHHHHHH
LLNFNPPICIGILPVILGITMIIQQKMNTSTHSSQDQDKIQASFIKFLPYVFIFIFSSFP
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TGLIIYWICSNSITIIQQLIIKAYIGRKFNLKHDL
CCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLEIRNLVFAVVLSVLIMMGWRLVYEKFFTVQHVVEDEDSSSMIPEIDNVLTYRSRNEII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHH
DSTQNLRVKLSNKEINGSISLKGAQLDDLVFKNYHITPDNSSDGIILLSPENTEGVYFIE
CCCCCEEEEEECCCCCCEEEEECCCHHHHHCCCEEECCCCCCCCEEEECCCCCCCEEEEE
FGWIDPQHKIVVPNQLSTWTSDKSVLSPNNTVTLTWNNQQGVIFQIKVTLDDYYMFKIEQ
ECCCCCCCEEEECCCCCCCCCCCCEECCCCEEEEEEECCCCEEEEEEEEECCEEEEEEEE
IIINNTDNVVNLIPYGRINRARHTTEKSYWISHEGAVGSFGYTLKEWTYKNIIKERNIKI
EEECCCCCEEEECCCCCCCHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEE
SQQNTDDNQWVGIADKYWFTALIPNILQKKSKLSFHVKHGKYNNEDRFQVDFSHDSYSAY
EECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEECCCCCCCC
PNKTASSTSYLFAGAKELKLLDKYKKDLNISLFDKAVDFGILYFITKPVFLLLEYFYDLI
CCCCCCCCEEEECCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
GNFGLAILLLTIVIKLIMFPLSYKSYVSMFKLKYLQPEILKIKELYKNDNTKMSKEVSLL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHEEEE
FKKNDVSPMSGFIPILIQIPVFFALYKVLFVTIEMRHAPFYLWVKDLSNFDTANVLTLFG
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCCHHHHHHHHH
LLNFNPPICIGILPVILGITMIIQQKMNTSTHSSQDQDKIQASFIKFLPYVFIFIFSSFP
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TGLIIYWICSNSITIIQQLIIKAYIGRKFNLKHDL
CCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA