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The map label for this gene is sodC [H]

Identifier: 56965149

GI number: 56965149

Start: 3514783

End: 3515403

Strand: Direct

Name: sodC [H]

Synonym: ABC3387

Alternate gene names: 56965149

Gene position: 3514783-3515403 (Clockwise)

Preceding gene: 56965148

Following gene: 56965154

Centisome position: 81.67

GC content: 52.01

Gene sequence:

>621_bases
ATGCAGTTCCGTAAAGCAGTAGGGGTATGCGCAGCAGCAGGAATGCTGGTGGCGTGCGGAAATGACCAAATTGACTTGCC
AGAAGAAGGAGACAATGGCATGGCTCCTGACAATGGCGAGCAAGAACAAGCCGACGCCTTTGCTGAATTAAACGACGAGC
AAGGAAGCCGTGTGGGCGATGTGTCTTTTTTTGAACAAGGCGAAAACAAAACAAGGGTCGATGTGACTGTTGATGGGCTT
CCTCCAGGATACCACGGCTTTCATGTCCATGAAGAAGCAGCCTGTGACGTGGATAACAACGAAGGGCCTTTTCAATCAGC
AGGTGGGCATTTCCATGATGAAGACGGGGCGCATAGCGGTCATAGTGGCGACATGCCACCTCTCTATGTAAGCGAAGATG
GCAGTGCCTTTTTATCGTTTACGACCGACCGCTTTACTCCAACTAATTTGGCAGATGAACGGGCTGTCATCGTCCATGCC
GATCCTGACAACTTTGGCCACATTCCTGAACGCTATGTAGCCGAAGGTGAAGAGGAAGGCGGCCCTGATGCAGATACGGA
AGCTACCGGCGATGCTGGTGATCGGATTGCATGTGGCATCGTTGTCAGTGAGGCACCGTAG

Upstream 100 bases:

>100_bases
TGATATTGGCTGATCTCATTTTTGTTTTCGACGTTTTAAAAAGAGGAATTTGTGATATAGTCCTGTAGCACATGAACATT
CCAAGGAGGGGGACGAAAAC

Downstream 100 bases:

>100_bases
GGCAATTGCGGCATCATTCGAACTTTATCTATCGTCTGAACGCCCGTTGCGTTTCCCGCAACGGGCGTTCTTTTCGTGTA
AATGACCGATACATCAGCTG

Product: superoxide dismutase [Cu-Zn]

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MQFRKAVGVCAAAGMLVACGNDQIDLPEEGDNGMAPDNGEQEQADAFAELNDEQGSRVGDVSFFEQGENKTRVDVTVDGL
PPGYHGFHVHEEAACDVDNNEGPFQSAGGHFHDEDGAHSGHSGDMPPLYVSEDGSAFLSFTTDRFTPTNLADERAVIVHA
DPDNFGHIPERYVAEGEEEGGPDADTEATGDAGDRIACGIVVSEAP

Sequences:

>Translated_206_residues
MQFRKAVGVCAAAGMLVACGNDQIDLPEEGDNGMAPDNGEQEQADAFAELNDEQGSRVGDVSFFEQGENKTRVDVTVDGL
PPGYHGFHVHEEAACDVDNNEGPFQSAGGHFHDEDGAHSGHSGDMPPLYVSEDGSAFLSFTTDRFTPTNLADERAVIVHA
DPDNFGHIPERYVAEGEEEGGPDADTEATGDAGDRIACGIVVSEAP
>Mature_206_residues
MQFRKAVGVCAAAGMLVACGNDQIDLPEEGDNGMAPDNGEQEQADAFAELNDEQGSRVGDVSFFEQGENKTRVDVTVDGL
PPGYHGFHVHEEAACDVDNNEGPFQSAGGHFHDEDGAHSGHSGDMPPLYVSEDGSAFLSFTTDRFTPTNLADERAVIVHA
DPDNFGHIPERYVAEGEEEGGPDADTEATGDAGDRIACGIVVSEAP

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May play a role in favoring mycobacterial survival in phagocytes [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=157, Percent_Identity=28.0254777070064, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI1787934, Length=156, Percent_Identity=28.8461538461538, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21750; Mature: 21750

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFRKAVGVCAAAGMLVACGNDQIDLPEEGDNGMAPDNGEQEQADAFAELNDEQGSRVGD
CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECC
VSFFEQGENKTRVDVTVDGLPPGYHGFHVHEEAACDVDNNEGPFQSAGGHFHDEDGAHSG
CHHHHCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HSGDMPPLYVSEDGSAFLSFTTDRFTPTNLADERAVIVHADPDNFGHIPERYVAEGEEEG
CCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCC
GPDADTEATGDAGDRIACGIVVSEAP
CCCCCCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MQFRKAVGVCAAAGMLVACGNDQIDLPEEGDNGMAPDNGEQEQADAFAELNDEQGSRVGD
CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECC
VSFFEQGENKTRVDVTVDGLPPGYHGFHVHEEAACDVDNNEGPFQSAGGHFHDEDGAHSG
CHHHHCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HSGDMPPLYVSEDGSAFLSFTTDRFTPTNLADERAVIVHADPDNFGHIPERYVAEGEEEG
CCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCC
GPDADTEATGDAGDRIACGIVVSEAP
CCCCCCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]