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The map label for this gene is dppB [H]

Identifier: 56963013

GI number: 56963013

Start: 1354590

End: 1355594

Strand: Direct

Name: dppB [H]

Synonym: ABC1241

Alternate gene names: 56963013

Gene position: 1354590-1355594 (Clockwise)

Preceding gene: 56963012

Following gene: 56963014

Centisome position: 31.47

GC content: 46.17

Gene sequence:

>1005_bases
ATGTTGGCGTACGCGATTCGCCGGGTTCTTTTGCTTATACCGGTTCTCTTTGGCATGACGCTTGTGACATTTTCGATTAT
CCAGCTCATTCCTGGGAACCCAGCGCAAACGATTTTAGGGGAACAAGCAACGCCGCAAGCGATTGCAGCACTTGAAGAAC
AGCTTGGCTTAAATGAGCCGTTTTGGGTGCAGTATGGCGTTTACATATCCGATTTGCTATCAGGCGACTTAGGGGTTTCC
CTTAGGACGAATAATGACATTGCTCAAGAAATGTGGCCGTATTTGGCCGGAACATTAGAGTTAACCGTTTTTGCGATGTT
GTTTGCGATTTTTGTTGGCGTCAACGCCGGAATTATTAGCGCCTGGAAGCAAAACTCGATTTTTGACTATACAAGCATGG
TTATCGCACTGATTGGCGTTTCCATGCCCGTCTTCTGGCTCGCATTAATGGAACAATGGTTTTTTGCCCAGGAGCTTGGC
TGGTTTCCAGCTTTTGGCCGCAACAATCCTCGTGAACCAGTTGAAGCGATCACACATCTTTATATTTTAGATGCAGCATT
GACTGGGAACTGGCAACAATTAGAGACGACGCTCAAACACTTAGTCTTGCCAATGGTTGCCCTTGGCACCATTCCGATGG
CGATCATTGCCAGGATGACCCGTTCAAGCATGCTTGAAGTGCTCCGGTCTGATTATATTCGCACTGTCCAAGCAAAAGGG
TCGAACCAGTCTGTTGTCATCTACAAGCATGCCTTGAAAAACGCTTTTATCCCTGTCATCACAGTCGTTGGTTTACAAGC
GGGCACTCTTTTAGGTGGTGCGATTTTAACGGAGACGATATTCAGTTGGCCAGGGATTGGACGCTACATTTATGACGCCA
TTTCATACCGGGATTATCCGGTCATTCAATCAGGGATTCTTGTGATCGCCTTCATTTTTGTTTGTATCAATTTAGTGGTT
GATTTGCTTTATGCCGCCATTGACCCGCGGATTAAATATGATTAG

Upstream 100 bases:

>100_bases
AGCGAGAGCTTGAAACATGTAGAAATTTCAAACTAGCCTACTGCAGGCAGCAGACAATTTCCTGCTGCCTGTCTTTATTC
AATAAAATGAGGTGAAGCCG

Downstream 100 bases:

>100_bases
GGGGGACCGGATGTGGAAACGGAAACGCAGTTAGCAACAAACCCATCTCCCAAGCGTCCAGATAAAAAGGAGAACAAAGC
AAAGTCTCCATGGGCGACTA

Product: oligopeptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MLAYAIRRVLLLIPVLFGMTLVTFSIIQLIPGNPAQTILGEQATPQAIAALEEQLGLNEPFWVQYGVYISDLLSGDLGVS
LRTNNDIAQEMWPYLAGTLELTVFAMLFAIFVGVNAGIISAWKQNSIFDYTSMVIALIGVSMPVFWLALMEQWFFAQELG
WFPAFGRNNPREPVEAITHLYILDAALTGNWQQLETTLKHLVLPMVALGTIPMAIIARMTRSSMLEVLRSDYIRTVQAKG
SNQSVVIYKHALKNAFIPVITVVGLQAGTLLGGAILTETIFSWPGIGRYIYDAISYRDYPVIQSGILVIAFIFVCINLVV
DLLYAAIDPRIKYD

Sequences:

>Translated_334_residues
MLAYAIRRVLLLIPVLFGMTLVTFSIIQLIPGNPAQTILGEQATPQAIAALEEQLGLNEPFWVQYGVYISDLLSGDLGVS
LRTNNDIAQEMWPYLAGTLELTVFAMLFAIFVGVNAGIISAWKQNSIFDYTSMVIALIGVSMPVFWLALMEQWFFAQELG
WFPAFGRNNPREPVEAITHLYILDAALTGNWQQLETTLKHLVLPMVALGTIPMAIIARMTRSSMLEVLRSDYIRTVQAKG
SNQSVVIYKHALKNAFIPVITVVGLQAGTLLGGAILTETIFSWPGIGRYIYDAISYRDYPVIQSGILVIAFIFVCINLVV
DLLYAAIDPRIKYD
>Mature_334_residues
MLAYAIRRVLLLIPVLFGMTLVTFSIIQLIPGNPAQTILGEQATPQAIAALEEQLGLNEPFWVQYGVYISDLLSGDLGVS
LRTNNDIAQEMWPYLAGTLELTVFAMLFAIFVGVNAGIISAWKQNSIFDYTSMVIALIGVSMPVFWLALMEQWFFAQELG
WFPAFGRNNPREPVEAITHLYILDAALTGNWQQLETTLKHLVLPMVALGTIPMAIIARMTRSSMLEVLRSDYIRTVQAKG
SNQSVVIYKHALKNAFIPVITVVGLQAGTLLGGAILTETIFSWPGIGRYIYDAISYRDYPVIQSGILVIAFIFVCINLVV
DLLYAAIDPRIKYD

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=45.8579881656805, Blast_Score=308, Evalue=2e-85,
Organism=Escherichia coli, GI1787053, Length=334, Percent_Identity=41.6167664670659, Blast_Score=263, Evalue=9e-72,
Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=41.7177914110429, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=37.0149253731343, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1787497, Length=338, Percent_Identity=35.7988165680473, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1787550, Length=332, Percent_Identity=32.2289156626506, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1788504, Length=381, Percent_Identity=26.509186351706, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37070; Mature: 37070

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYAIRRVLLLIPVLFGMTLVTFSIIQLIPGNPAQTILGEQATPQAIAALEEQLGLNEP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
FWVQYGVYISDLLSGDLGVSLRTNNDIAQEMWPYLAGTLELTVFAMLFAIFVGVNAGIIS
CEEEHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
AWKQNSIFDYTSMVIALIGVSMPVFWLALMEQWFFAQELGWFPAFGRNNPREPVEAITHL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
YILDAALTGNWQQLETTLKHLVLPMVALGTIPMAIIARMTRSSMLEVLRSDYIRTVQAKG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SNQSVVIYKHALKNAFIPVITVVGLQAGTLLGGAILTETIFSWPGIGRYIYDAISYRDYP
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCH
VIQSGILVIAFIFVCINLVVDLLYAAIDPRIKYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLAYAIRRVLLLIPVLFGMTLVTFSIIQLIPGNPAQTILGEQATPQAIAALEEQLGLNEP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
FWVQYGVYISDLLSGDLGVSLRTNNDIAQEMWPYLAGTLELTVFAMLFAIFVGVNAGIIS
CEEEHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
AWKQNSIFDYTSMVIALIGVSMPVFWLALMEQWFFAQELGWFPAFGRNNPREPVEAITHL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
YILDAALTGNWQQLETTLKHLVLPMVALGTIPMAIIARMTRSSMLEVLRSDYIRTVQAKG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SNQSVVIYKHALKNAFIPVITVVGLQAGTLLGGAILTETIFSWPGIGRYIYDAISYRDYP
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCH
VIQSGILVIAFIFVCINLVVDLLYAAIDPRIKYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]