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The map label for this gene is dppC [H]

Identifier: 56963014

GI number: 56963014

Start: 1355607

End: 1356518

Strand: Direct

Name: dppC [H]

Synonym: ABC1242

Alternate gene names: 56963014

Gene position: 1355607-1356518 (Clockwise)

Preceding gene: 56963013

Following gene: 56963016

Centisome position: 31.5

GC content: 48.79

Gene sequence:

>912_bases
GTGGAAACGGAAACGCAGTTAGCAACAAACCCATCTCCCAAGCGTCCAGATAAAAAGGAGAACAAAGCAAAGTCTCCATG
GGCGACTATGATTGTTCAGCTAATCGAAAATAAACTATCTTTAATTGGTTTAATCATTATTATCTGTTTTCTATTACTCG
CATTGCTGGCCCCTTATTTAACGCCGTATTCATTTGCTGAAACCAATTCGTCGATTCGGTTATTGCCCCCTTCTGGCGAT
CATTGGTTTGGTACGGACGATCTCGGCCGCGACGTGTTTACAAGAGTCGCTTATGGAGCGCGGATTTCCCTTTTGATCGG
CTTTTTCGCCGTCGTCGGTGCAATGGTTGTCGGTACGCTGCTCGGGCTGATTGCAGGCTTTTACGGAAAGTGGGTTGATA
TGCTTCTTTCCCGTGTCTTTGATGTGATGCTTGCTTTTCCGAGCATTTTGCTGGCGATTGCCATTGTCGCTATTCTTGGC
CCGTCGCTTTCCAACGCGATGCTAGCCATTGCGATTATTAACGTGCCGATTTTTGCACGACTTGTACGGTCTAAAGTCAT
CAGCCTTAAACAGGAAGAATTCGTAATGGCGGCTCGTGCCCAAGGAATGAAAAACGGCCGTTTGCTGTTCCACCATATTC
TCCCGAACAGCATGGCGCCGATCATTGTCCAGGCGACGTTAGGATTTGGCGTCGCGATTATTGAAGCGGCCGCACTTGGC
TTTCTCGGCATGGGGGCGAGCCCGCCGACGCCAGAGTGGGGCAAAATGCTTGCTGATTCAAGAGGCTATATTCAAAACGC
CTACTGGTCTGTCCTTTTCCCAGGCTTGTCGATTATGCTAGTCGTGCTTGGCTTTAACATGATCGGTGATGGGTTGCGCG
ATGCATTGGACCCGAAAATGAAGGGGAAATAA

Upstream 100 bases:

>100_bases
TCTTGTGATCGCCTTCATTTTTGTTTGTATCAATTTAGTGGTTGATTTGCTTTATGCCGCCATTGACCCGCGGATTAAAT
ATGATTAGGGGGGACCGGAT

Downstream 100 bases:

>100_bases
GGCAATCGGTTATGAATGCAGCGTTAAGGGGCGAAAGCATCTACGAGTCGTAAACACCATTAGCCCCTTGTCTGTTTACA
GCTTCACACTTGAGAATTGT

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
METETQLATNPSPKRPDKKENKAKSPWATMIVQLIENKLSLIGLIIIICFLLLALLAPYLTPYSFAETNSSIRLLPPSGD
HWFGTDDLGRDVFTRVAYGARISLLIGFFAVVGAMVVGTLLGLIAGFYGKWVDMLLSRVFDVMLAFPSILLAIAIVAILG
PSLSNAMLAIAIINVPIFARLVRSKVISLKQEEFVMAARAQGMKNGRLLFHHILPNSMAPIIVQATLGFGVAIIEAAALG
FLGMGASPPTPEWGKMLADSRGYIQNAYWSVLFPGLSIMLVVLGFNMIGDGLRDALDPKMKGK

Sequences:

>Translated_303_residues
METETQLATNPSPKRPDKKENKAKSPWATMIVQLIENKLSLIGLIIIICFLLLALLAPYLTPYSFAETNSSIRLLPPSGD
HWFGTDDLGRDVFTRVAYGARISLLIGFFAVVGAMVVGTLLGLIAGFYGKWVDMLLSRVFDVMLAFPSILLAIAIVAILG
PSLSNAMLAIAIINVPIFARLVRSKVISLKQEEFVMAARAQGMKNGRLLFHHILPNSMAPIIVQATLGFGVAIIEAAALG
FLGMGASPPTPEWGKMLADSRGYIQNAYWSVLFPGLSIMLVVLGFNMIGDGLRDALDPKMKGK
>Mature_303_residues
METETQLATNPSPKRPDKKENKAKSPWATMIVQLIENKLSLIGLIIIICFLLLALLAPYLTPYSFAETNSSIRLLPPSGD
HWFGTDDLGRDVFTRVAYGARISLLIGFFAVVGAMVVGTLLGLIAGFYGKWVDMLLSRVFDVMLAFPSILLAIAIVAILG
PSLSNAMLAIAIINVPIFARLVRSKVISLKQEEFVMAARAQGMKNGRLLFHHILPNSMAPIIVQATLGFGVAIIEAAALG
FLGMGASPPTPEWGKMLADSRGYIQNAYWSVLFPGLSIMLVVLGFNMIGDGLRDALDPKMKGK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=289, Percent_Identity=46.0207612456747, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI1787760, Length=299, Percent_Identity=43.4782608695652, Blast_Score=255, Evalue=2e-69,
Organism=Escherichia coli, GI1789964, Length=257, Percent_Identity=51.7509727626459, Blast_Score=227, Evalue=7e-61,
Organism=Escherichia coli, GI1789889, Length=244, Percent_Identity=38.1147540983607, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1787549, Length=291, Percent_Identity=35.3951890034364, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787498, Length=286, Percent_Identity=34.6153846153846, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=29.3333333333333, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32818; Mature: 32818

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METETQLATNPSPKRPDKKENKAKSPWATMIVQLIENKLSLIGLIIIICFLLLALLAPYL
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPYSFAETNSSIRLLPPSGDHWFGTDDLGRDVFTRVAYGARISLLIGFFAVVGAMVVGTL
CCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLIAGFYGKWVDMLLSRVFDVMLAFPSILLAIAIVAILGPSLSNAMLAIAIINVPIFAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LVRSKVISLKQEEFVMAARAQGMKNGRLLFHHILPNSMAPIIVQATLGFGVAIIEAAALG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
FLGMGASPPTPEWGKMLADSRGYIQNAYWSVLFPGLSIMLVVLGFNMIGDGLRDALDPKM
HHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KGK
CCC
>Mature Secondary Structure
METETQLATNPSPKRPDKKENKAKSPWATMIVQLIENKLSLIGLIIIICFLLLALLAPYL
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPYSFAETNSSIRLLPPSGDHWFGTDDLGRDVFTRVAYGARISLLIGFFAVVGAMVVGTL
CCCHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLIAGFYGKWVDMLLSRVFDVMLAFPSILLAIAIVAILGPSLSNAMLAIAIINVPIFAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LVRSKVISLKQEEFVMAARAQGMKNGRLLFHHILPNSMAPIIVQATLGFGVAIIEAAALG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
FLGMGASPPTPEWGKMLADSRGYIQNAYWSVLFPGLSIMLVVLGFNMIGDGLRDALDPKM
HHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KGK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]