Click here to switch to the map view.

The map label for this gene is radA [H]

Identifier: 55980510

GI number: 55980510

Start: 503700

End: 504971

Strand: Reverse

Name: radA [H]

Synonym: TTHA0541

Alternate gene names: 55980510

Gene position: 504971-503700 (Counterclockwise)

Preceding gene: 55980511

Following gene: 55980509

Centisome position: 27.3

GC content: 73.51

Gene sequence:

>1272_bases
ATGGCCAAGGCCACCTACGCCTGCGTGGAGTGCGGCTACCGCACCCCCAAGCCCTTGGGGCGGTGCCCCTCCTGCGGTTC
CTGGGAGAGCTTCCAGGAGGTGGCCCCCGCCCCGGCCTCGAGGCGGGCCAAGCCCTCCCCCCTCCCCCTCCTCGCCCTCT
CCCAGGTGGACGAGGCCGAGGAGCGCCGCTTCTCCTCGGGGCTTTCCGAGGTGGACCGGGTCCTGGGCGGGGGGTTCGTG
ACGGGGGAGGTGGTTCTATTGGGAGGGGAGCCCGGGGTGGGCAAGAGCACCCTCCTCCTGGAGATGGCCAAGCGGATGCC
CCAAAGGGTCTACTACGTGGCCGGGGAGGAGTCCCCCGCCCAGATCAAGCTCCGGGCGCAGCGCCTCGGGGTGAAGGACC
TCCTCCTCGTGCGGGAGACCCGCCTCGAGCCCCTCCTCGCCCTCCTGGAGGAGGACCCCCCGGAGGTCCTCTTCGTGGAC
TCCGTGCAGACCCTCGAGGCCGGGGGGAGCCCGGGGAGCTTGGTGGCCGTCCGGGAGGCGACCTCGGCCCTGGTGCGCTT
CGCCAAGGAACGGGGCGTGGCCGTGGTCCTCGTGGGCCACGTGACCAAGGAGGGGGTGGTGGCCGGCCCCAAGAGCGTGG
AGCACGCCGTGGACGCCACCCTCTACCTGGAGACCGCAGGGCCCTACCGGGTCCTGCGGAGCGCCAAGAACCGCTTCGGC
CCCGTGGGGGAGATCGGGGTCTTCCGCATGGAGGAGGCGGGGCTTCTGGAGGTGGAGAACCCCTCCGAGGCCTTCCTCAA
GGAGCGCCCCCTGGGGGTGCCGGGAAGCGCCGTGGCCCTGGCCCTGGCCGGGGAGCGGGCCTTGGCCCTGGAGGTCCAGG
CCCTGGCGGCCAAAACCCCCTTCCCCGCCCCCCGCAGGGTGGTCCAGGGGCTGGACGGAAGGCGCGTGGACGTGGTCCTC
GCGGTCCTGGAGCGGAGGCTCGGCCTGCCCCTCGCCAACCTGGACGTCTACGTGAACCTCGCCGGGGGGCTCAAGGTCCA
GGACCCGGGGCTGGACCTGGCCGTGGCCCTGGCGGTGTACTCCGCCGTGGTGGGCCGCCCCCTGCCCGCCGACCTCGCCC
TGGTGGGGGAGGTGGGCCTGGCCGGGGAGGTGCGGCGGGTGGCGGGGCTGGAGCGGAGGCTTAGGGAGGGGGAGCGGGCG
GGGTTCGGCCGCTTCCTCCACCCGGGGAACCTTAAGCGCCTTCAGGAGGCTGTGGAGGCGTACCTGGCATGA

Upstream 100 bases:

>100_bases
CTGCGGAAGCCCACGGGCCGGATCCACGTGAGCGTGGAGGGAGGCCAGGTGGCCTTCCACGAGGTGGAGGGGGAGGAGCT
CCTCGTCTAGCCCCCGGAGG

Downstream 100 bases:

>100_bases
AGACGCGGCACCTCGTCTACCTCGCCTTCGCCCTGCTCGGGCTGGGCCTCGCGGGGCTTCTGGAGGACTGGGGGCTCCTT
CCCCAAAGCCCCTCCCTCCT

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MAKATYACVECGYRTPKPLGRCPSCGSWESFQEVAPAPASRRAKPSPLPLLALSQVDEAEERRFSSGLSEVDRVLGGGFV
TGEVVLLGGEPGVGKSTLLLEMAKRMPQRVYYVAGEESPAQIKLRAQRLGVKDLLLVRETRLEPLLALLEEDPPEVLFVD
SVQTLEAGGSPGSLVAVREATSALVRFAKERGVAVVLVGHVTKEGVVAGPKSVEHAVDATLYLETAGPYRVLRSAKNRFG
PVGEIGVFRMEEAGLLEVENPSEAFLKERPLGVPGSAVALALAGERALALEVQALAAKTPFPAPRRVVQGLDGRRVDVVL
AVLERRLGLPLANLDVYVNLAGGLKVQDPGLDLAVALAVYSAVVGRPLPADLALVGEVGLAGEVRRVAGLERRLREGERA
GFGRFLHPGNLKRLQEAVEAYLA

Sequences:

>Translated_423_residues
MAKATYACVECGYRTPKPLGRCPSCGSWESFQEVAPAPASRRAKPSPLPLLALSQVDEAEERRFSSGLSEVDRVLGGGFV
TGEVVLLGGEPGVGKSTLLLEMAKRMPQRVYYVAGEESPAQIKLRAQRLGVKDLLLVRETRLEPLLALLEEDPPEVLFVD
SVQTLEAGGSPGSLVAVREATSALVRFAKERGVAVVLVGHVTKEGVVAGPKSVEHAVDATLYLETAGPYRVLRSAKNRFG
PVGEIGVFRMEEAGLLEVENPSEAFLKERPLGVPGSAVALALAGERALALEVQALAAKTPFPAPRRVVQGLDGRRVDVVL
AVLERRLGLPLANLDVYVNLAGGLKVQDPGLDLAVALAVYSAVVGRPLPADLALVGEVGLAGEVRRVAGLERRLREGERA
GFGRFLHPGNLKRLQEAVEAYLA
>Mature_422_residues
AKATYACVECGYRTPKPLGRCPSCGSWESFQEVAPAPASRRAKPSPLPLLALSQVDEAEERRFSSGLSEVDRVLGGGFVT
GEVVLLGGEPGVGKSTLLLEMAKRMPQRVYYVAGEESPAQIKLRAQRLGVKDLLLVRETRLEPLLALLEEDPPEVLFVDS
VQTLEAGGSPGSLVAVREATSALVRFAKERGVAVVLVGHVTKEGVVAGPKSVEHAVDATLYLETAGPYRVLRSAKNRFGP
VGEIGVFRMEEAGLLEVENPSEAFLKERPLGVPGSAVALALAGERALALEVQALAAKTPFPAPRRVVQGLDGRRVDVVLA
VLERRLGLPLANLDVYVNLAGGLKVQDPGLDLAVALAVYSAVVGRPLPADLALVGEVGLAGEVRRVAGLERRLREGERAG
FGRFLHPGNLKRLQEAVEAYLA

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=430, Percent_Identity=43.953488372093, Blast_Score=335, Evalue=4e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 45000; Mature: 44869

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKATYACVECGYRTPKPLGRCPSCGSWESFQEVAPAPASRRAKPSPLPLLALSQVDEAE
CCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEHHHCCHHH
ERRFSSGLSEVDRVLGGGFVTGEVVLLGGEPGVGKSTLLLEMAKRMPQRVYYVAGEESPA
HHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
QIKLRAQRLGVKDLLLVRETRLEPLLALLEEDPPEVLFVDSVQTLEAGGSPGSLVAVREA
EEEEEHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHCCCCCCCEEEHHHH
TSALVRFAKERGVAVVLVGHVTKEGVVAGPKSVEHAVDATLYLETAGPYRVLRSAKNRFG
HHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHCEEEEEECCCHHHHHHHHHHHCC
PVGEIGVFRMEEAGLLEVENPSEAFLKERPLGVPGSAVALALAGERALALEVQALAAKTP
CCCCCCEEEECCCCEEEECCCHHHHHHHCCCCCCCHHEEEEECCCCEEEEEHHHHHHCCC
FPAPRRVVQGLDGRRVDVVLAVLERRLGLPLANLDVYVNLAGGLKVQDPGLDLAVALAVY
CCCHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCEEEEEECCCEEEECCCCHHHHHHHHH
SAVVGRPLPADLALVGEVGLAGEVRRVAGLERRLREGERAGFGRFLHPGNLKRLQEAVEA
HHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
YLA
HCC
>Mature Secondary Structure 
AKATYACVECGYRTPKPLGRCPSCGSWESFQEVAPAPASRRAKPSPLPLLALSQVDEAE
CCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEHHHCCHHH
ERRFSSGLSEVDRVLGGGFVTGEVVLLGGEPGVGKSTLLLEMAKRMPQRVYYVAGEESPA
HHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
QIKLRAQRLGVKDLLLVRETRLEPLLALLEEDPPEVLFVDSVQTLEAGGSPGSLVAVREA
EEEEEHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHCCCCCCCEEEHHHH
TSALVRFAKERGVAVVLVGHVTKEGVVAGPKSVEHAVDATLYLETAGPYRVLRSAKNRFG
HHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHCEEEEEECCCHHHHHHHHHHHCC
PVGEIGVFRMEEAGLLEVENPSEAFLKERPLGVPGSAVALALAGERALALEVQALAAKTP
CCCCCCEEEECCCCEEEECCCHHHHHHHCCCCCCCHHEEEEECCCCEEEEEHHHHHHCCC
FPAPRRVVQGLDGRRVDVVLAVLERRLGLPLANLDVYVNLAGGLKVQDPGLDLAVALAVY
CCCHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCEEEEEECCCEEEECCCCHHHHHHHHH
SAVVGRPLPADLALVGEVGLAGEVRRVAGLERRLREGERAGFGRFLHPGNLKRLQEAVEA
HHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
YLA
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8016066 [H]