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The map label for this gene is ycjO [C]

Identifier: 55980324

GI number: 55980324

Start: 336299

End: 337174

Strand: Reverse

Name: ycjO [C]

Synonym: TTHA0355

Alternate gene names: 55980324

Gene position: 337174-336299 (Counterclockwise)

Preceding gene: 55980325

Following gene: 55980323

Centisome position: 18.23

GC content: 64.16

Gene sequence:

>876_bases
ATGCTCACCCTAAGACAGGTCCGTTTAGCCTGGATCCTGGTCCTGCCCACGCTCCTGGTGGTGGTCCTGGTGGCGGGCTA
CCCCCTGGCCCAGGTCTTCTACTGGTCCTTCTTCAAGGCCGACATCGCCTTCGTGGAGCCCCCGGAGTTCGTGGGCCTGG
AGAACTACGCTTACCTCTTCCAGGACCCGGACTTCCGCCAGGCCCTTTGGAACACCCTCAAGTTCACCGTGGTCTCCGTG
AGCCTGGAGACGGTTTTGGGCCTGGCCATCGCCCTCATCATCCACTCCAACTTCCGTGGCCGGGGCCTGGTGCGCACCGC
CATCCTCATCCCCTGGGCCATCCCCACGGTGGTCTCGGCCAAGATGTGGCAGTGGATGCTGAACGACGTCTACGGCGTCA
TCAACGTCCTCGGGGTCAAGCTCGGCCTCCTTTCCCAGAAGGTGGCCTTCCTGGCCCGGCCCGAGCTCCTTTTGCCCTCC
ATCATCGCCGTGGACGTCTGGAAGACCACGCCCTTCATGGCCCTCCTCCTCCTCGCGGGCCTGCAGATGATCCCGGAGGA
GCTTTACGAGGCGGCGAGCATTGACGGGGCCTCGAGGTGGCAGCAGTTCTGGAGCATCACCCTGCCCCTCCTCACCCCCG
CCTTGGTGGTGGCCCTCATCTTCCGGACCCTGGACGCCCTCCGGGTCTTTGACGTGGTCTTCGTCATGAGCGGCGTGAAC
CCCGCCACCCGCACCCTGGCCGTCTACAACCGCCAGACCCTGGTGGACTTCCAGGACTTGGGTTACGGCTCCGCCATCAG
CGTGGCCATCCTCGTGATCATCTTCGCCTTCGTTCTCCTCTACATGCGCACCGTCGGGAAGGAGGCGTTGAAGTGA

Upstream 100 bases:

>100_bases
GCAGGCCGTGCGGGACCTCGAGGCCCGCATCCGCCGCATCCTGCGCTAGCCCCATGCCTTCCCGGGGAGGCCTGGGCCTC
CCCGGGTTCACCCCAAGGCC

Downstream 100 bases:

>100_bases
GGCGTGCAAGCCGCCTTCTGGGAAGGCTCTTCTTCTACCTCCTCGTGGTCTTCGTGGTCGTCTACAGCGTTTTTCCCTTC
TACTGGGCGGTGATCTCCAG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MLTLRQVRLAWILVLPTLLVVVLVAGYPLAQVFYWSFFKADIAFVEPPEFVGLENYAYLFQDPDFRQALWNTLKFTVVSV
SLETVLGLAIALIIHSNFRGRGLVRTAILIPWAIPTVVSAKMWQWMLNDVYGVINVLGVKLGLLSQKVAFLARPELLLPS
IIAVDVWKTTPFMALLLLAGLQMIPEELYEAASIDGASRWQQFWSITLPLLTPALVVALIFRTLDALRVFDVVFVMSGVN
PATRTLAVYNRQTLVDFQDLGYGSAISVAILVIIFAFVLLYMRTVGKEALK

Sequences:

>Translated_291_residues
MLTLRQVRLAWILVLPTLLVVVLVAGYPLAQVFYWSFFKADIAFVEPPEFVGLENYAYLFQDPDFRQALWNTLKFTVVSV
SLETVLGLAIALIIHSNFRGRGLVRTAILIPWAIPTVVSAKMWQWMLNDVYGVINVLGVKLGLLSQKVAFLARPELLLPS
IIAVDVWKTTPFMALLLLAGLQMIPEELYEAASIDGASRWQQFWSITLPLLTPALVVALIFRTLDALRVFDVVFVMSGVN
PATRTLAVYNRQTLVDFQDLGYGSAISVAILVIIFAFVLLYMRTVGKEALK
>Mature_291_residues
MLTLRQVRLAWILVLPTLLVVVLVAGYPLAQVFYWSFFKADIAFVEPPEFVGLENYAYLFQDPDFRQALWNTLKFTVVSV
SLETVLGLAIALIIHSNFRGRGLVRTAILIPWAIPTVVSAKMWQWMLNDVYGVINVLGVKLGLLSQKVAFLARPELLLPS
IIAVDVWKTTPFMALLLLAGLQMIPEELYEAASIDGASRWQQFWSITLPLLTPALVVALIFRTLDALRVFDVVFVMSGVN
PATRTLAVYNRQTLVDFQDLGYGSAISVAILVIIFAFVLLYMRTVGKEALK

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=259, Percent_Identity=33.976833976834, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1789861, Length=289, Percent_Identity=27.3356401384083, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1790465, Length=257, Percent_Identity=26.4591439688716, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87082099, Length=276, Percent_Identity=26.8115942028986, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32564; Mature: 32564

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLRQVRLAWILVLPTLLVVVLVAGYPLAQVFYWSFFKADIAFVEPPEFVGLENYAYLF
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEE
QDPDFRQALWNTLKFTVVSVSLETVLGLAIALIIHSNFRGRGLVRTAILIPWAIPTVVSA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
KMWQWMLNDVYGVINVLGVKLGLLSQKVAFLARPELLLPSIIAVDVWKTTPFMALLLLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHH
LQMIPEELYEAASIDGASRWQQFWSITLPLLTPALVVALIFRTLDALRVFDVVFVMSGVN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PATRTLAVYNRQTLVDFQDLGYGSAISVAILVIIFAFVLLYMRTVGKEALK
HHHHHHHHHCCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTLRQVRLAWILVLPTLLVVVLVAGYPLAQVFYWSFFKADIAFVEPPEFVGLENYAYLF
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEE
QDPDFRQALWNTLKFTVVSVSLETVLGLAIALIIHSNFRGRGLVRTAILIPWAIPTVVSA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
KMWQWMLNDVYGVINVLGVKLGLLSQKVAFLARPELLLPSIIAVDVWKTTPFMALLLLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHH
LQMIPEELYEAASIDGASRWQQFWSITLPLLTPALVVALIFRTLDALRVFDVVFVMSGVN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PATRTLAVYNRQTLVDFQDLGYGSAISVAILVIIFAFVLLYMRTVGKEALK
HHHHHHHHHCCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA