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The map label for this gene is 55980163

Identifier: 55980163

GI number: 55980163

Start: 189560

End: 190102

Strand: Direct

Name: 55980163

Synonym: TTHA0194

Alternate gene names: NA

Gene position: 189560-190102 (Clockwise)

Preceding gene: 55980162

Following gene: 55980164

Centisome position: 10.25

GC content: 66.85

Gene sequence:

>543_bases
ATGCGCGCCCTGCTCGCCCTCTCTAGAGCCATTGACGCCCTAAGCGAAGGCGTGGGCCGGATCATCGTCTGGCTCGTCCT
CGCGGTCTCCCTCCTCTCGGCCGGAAACGCCCTGATGCGCTACGCCTTCCGCTACAGCTCCAACGCCTACCTCGAGGCCC
AGTGGTACCTCTTCAGCCTCATCTTCCTCCTGGGCGGCGCCTACGCCCTCAAGCACAACGCCCACGTGCGCATTGACCTC
GTTTACGGGCGCCTCTCCAAGAGGACCCAGGCCTGGATTGACCTGGTGGGCACCCTCCTCTTCCTCATCCCCATGAGCCT
CGGGGTCATCTACCTCTCCTGGGACTGGGTGGCGAACGCCGTGGCCATCCGCGAGATGTCCCCCGACGTGGGGGGGCTGC
CCCGCTGGCCCATCAAGATCGCCCTGCCCGTGGGGTTCGCCCTTCTCGCCCTCCAGGGCCTCTCCGAGCTCATCAAGCGG
CTGGCCTTTCTGACCGGGCACCTGCCCGACTGGACGCCCGGGGAAGAGGAGGAGGTGGTCTGA

Upstream 100 bases:

>100_bases
CCGGGGGGCGCATAGCCCGAAAACGCCTTAAGAAAGCCGCGTTGACAGGCCTCGCCCCCCTAGGTAGGATGGGGCGGGTC
TACACCGGGAGGTTAAGATT

Downstream 100 bases:

>100_bases
GGTGGACCTCTACGCCGTCATGCCCCCCCTGATGTTCGCCGCCCTGGTGGTCTTCCTGCTCTCCGGCTACCCCGTGGCCT
TCTCCCTAGGGGCGGTGGGG

Product: tripartite transporter, small subunit

Products: NA

Alternate protein names: TRAP Transporter DctQ-Like Membrane Protein; C4-Dicarboxylate Transporter Family Protein DctQ Subunit; Mannitol Transporter; TRAP Transporter DctQ Family Protein; TRAP-Type Transporter Small Permease Component; Trap Dicarboxylate Transporter Dctm Subunit; Tripartite Transporter Small Subunit; TRAP-T Family Tripartite Transporter; TRAP Transporter Small Transmembrane Protein; Transporter DctQ Related Transmembrane Protein; C4-Dicarboxylate Transporter Permease; TRAP Dicarboxylate Transporter DctQ Subunit; Tripartite ATP-Independent Periplasmic Transporter; TRAP Mannitol/C4-Dicarboxylate Transporter; Permease Component Of C4 Dicarboxylate Transporter; Permease; Small Integral Membrane Tranport Protein; Transmembrane Transporter Component; TRAP C4-Dicarboxylate Transport System DctQ Subunit; Trap Transporter Membrane Protein Dctq Family; TRAP Dicarboxylate Family Transporter DctQ Subunit; Small Permease Of TRAP-Type Transporter; Trap-Type Transport System Small Permease Component; TRAP Dicarboxylate Transporter; TRAP-Type Large Permease Component; TRAP Transporter DctQ-Like Membrane Protein Family; Triosephosphate Isomerase (TIM; TRAP-Type Transport System Small Permease Component; TRAP Transporter Small Subunit; Tripartite ATP-Independent Periplasmic Protein; Permease Protein; Tripartite ATP-Independent Periplasmic; C4-Dicarboxylate Transporter Small Subunit

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MRALLALSRAIDALSEGVGRIIVWLVLAVSLLSAGNALMRYAFRYSSNAYLEAQWYLFSLIFLLGGAYALKHNAHVRIDL
VYGRLSKRTQAWIDLVGTLLFLIPMSLGVIYLSWDWVANAVAIREMSPDVGGLPRWPIKIALPVGFALLALQGLSELIKR
LAFLTGHLPDWTPGEEEEVV

Sequences:

>Translated_180_residues
MRALLALSRAIDALSEGVGRIIVWLVLAVSLLSAGNALMRYAFRYSSNAYLEAQWYLFSLIFLLGGAYALKHNAHVRIDL
VYGRLSKRTQAWIDLVGTLLFLIPMSLGVIYLSWDWVANAVAIREMSPDVGGLPRWPIKIALPVGFALLALQGLSELIKR
LAFLTGHLPDWTPGEEEEVV
>Mature_180_residues
MRALLALSRAIDALSEGVGRIIVWLVLAVSLLSAGNALMRYAFRYSSNAYLEAQWYLFSLIFLLGGAYALKHNAHVRIDL
VYGRLSKRTQAWIDLVGTLLFLIPMSLGVIYLSWDWVANAVAIREMSPDVGGLPRWPIKIALPVGFALLALQGLSELIKR
LAFLTGHLPDWTPGEEEEVV

Specific function: Unknown

COG id: COG4665

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19979; Mature: 19979

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS00037 MYB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALLALSRAIDALSEGVGRIIVWLVLAVSLLSAGNALMRYAFRYSSNAYLEAQWYLFSL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEHHHHHHHH
IFLLGGAYALKHNAHVRIDLVYGRLSKRTQAWIDLVGTLLFLIPMSLGVIYLSWDWVANA
HHHHCCHHEEECCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHH
VAIREMSPDVGGLPRWPIKIALPVGFALLALQGLSELIKRLAFLTGHLPDWTPGEEEEVV
HHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRALLALSRAIDALSEGVGRIIVWLVLAVSLLSAGNALMRYAFRYSSNAYLEAQWYLFSL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEHHHHHHHH
IFLLGGAYALKHNAHVRIDLVYGRLSKRTQAWIDLVGTLLFLIPMSLGVIYLSWDWVANA
HHHHCCHHEEECCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHH
VAIREMSPDVGGLPRWPIKIALPVGFALLALQGLSELIKRLAFLTGHLPDWTPGEEEEVV
HHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA