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The map label for this gene is rimP [H]

Identifier: 54295604

GI number: 54295604

Start: 3071543

End: 3072001

Strand: Reverse

Name: rimP [H]

Synonym: lpl2691

Alternate gene names: 54295604

Gene position: 3072001-3071543 (Counterclockwise)

Preceding gene: 54295605

Following gene: 54295603

Centisome position: 91.82

GC content: 34.64

Gene sequence:

>459_bases
TTGTTTATACATACTATGATAAATGATGACTTGATAGTGCTATTAGAGCCTATAATCAAAAATATGGGTTATGAACTTTG
GGGCTGTGAATATCTTTCCCAAGGGAAACACTCGTTATTAAGAATTTATATAGACAAGCCAGATGGAATAGGAATCGATG
ACTGTCAGGAAGTGAGTAAGCAAGTCAGTGCAATGCTTGATGTTGAAGACCCTATTCCAGGGCATTATAGTTTGGAAATA
TCATCTCCTGGGATACCCCGGCCCTTGTTTAGTATCTGGCAATATCAGCGTTACCTTGGTTATGAAATTCATGTAAAAAC
TTTTAAGCCAGTTAATGGAAAGCGAAAATTATCAGGTATTATTGTTTCAGCATCAGGAGATACAATAGTATTGGATATTA
ATAATGAACATCAAGAAATACTTTTATCAAATATTGTGAAAGCAAATTTGACAGTCTAG

Upstream 100 bases:

>100_bases
CAATTTTATAAAACCCCATTTTTGGGGTTTTTTATTATGTTGACTAGGATACTATCTAAATCTAAGTCAGTTACCAGGCT
TGGGCGAGTGCGCCCTTTTT

Downstream 100 bases:

>100_bases
AGAGGCGAACAATGAGCAAAGAATTGTTATTAGTTGCTGAGGCATTATCAAACGAAAGAGGCGTTAGTAAAGACGTCATT
ATACTTGCCATTCAGGCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MFIHTMINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAMLDVEDPIPGHYSLEI
SSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASGDTIVLDINNEHQEILLSNIVKANLTV

Sequences:

>Translated_152_residues
MFIHTMINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAMLDVEDPIPGHYSLEI
SSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASGDTIVLDINNEHQEILLSNIVKANLTV
>Mature_152_residues
MFIHTMINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSKQVSAMLDVEDPIPGHYSLEI
SSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGIIVSASGDTIVLDINNEHQEILLSNIVKANLTV

Specific function: Required for maturation of 30S ribosomal subunits [H]

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family [H]

Homologues:

Organism=Escherichia coli, GI226510978, Length=132, Percent_Identity=46.969696969697, Blast_Score=129, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003728 [H]

Pfam domain/function: PF02576 DUF150 [H]

EC number: NA

Molecular weight: Translated: 17182; Mature: 17182

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIHTMINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSK
CEEEEEECCCHHHHHHHHHHHCCCCEECHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHH
QVSAMLDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGI
HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEEE
IVSASGDTIVLDINNEHQEILLSNIVKANLTV
EEECCCCEEEEEECCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFIHTMINDDLIVLLEPIIKNMGYELWGCEYLSQGKHSLLRIYIDKPDGIGIDDCQEVSK
CEEEEEECCCHHHHHHHHHHHCCCCEECHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHH
QVSAMLDVEDPIPGHYSLEISSPGIPRPLFSIWQYQRYLGYEIHVKTFKPVNGKRKLSGI
HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEEE
IVSASGDTIVLDINNEHQEILLSNIVKANLTV
EEECCCCEEEEEECCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA