| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is mutT3 [H]
Identifier: 54027315
GI number: 54027315
Start: 5645664
End: 5646392
Strand: Reverse
Name: mutT3 [H]
Synonym: nfa53410
Alternate gene names: 54027315
Gene position: 5646392-5645664 (Counterclockwise)
Preceding gene: 54027319
Following gene: 54027313
Centisome position: 93.77
GC content: 75.03
Gene sequence:
>729_bases GTGATGCGTGGTGACGGTGACGGGTGGTCGGAGGGCCCGGACGGGCTACGGCACTGGGGCAAGTACGGCGCTGCCGGGTT GTTGCTGCGGGCGCCGTTGGCGGGCGGCGGCTCGGCGGTGCTGTTGCAGCATCGGGCGCCGTGGAGCCACCAGGGCGGCA CCTGGGCGCTGCCGGGTGGCGCCAAGGACAGCCACGAGTCCTCCGTGCACGCCGCCGTGCGCGAGGCGTGGGAGGAAGCG GGCATCGACCCCACCGCCGTGCGAGTGCGCGCCGAACGGGTGACCGCGTCGGCGTTGAGCGGCTGGACCTACACCACCGT CGTCGCCGACACCGACCAGACCCTGCGCACCAGCCGCGACCGGGAGAGCCTCGAACTGGCGTGGGTCCCCGAGGACGAGG TCACCGACCGCCCCCTGCACCCCGGCTTCGCCGCCGCCTGGCCCGCCCTGCGCGCCACCCCTGCTCGCGCCTGCCTGAGC GAGCTGGACGACGCCGACACCGTGGCCGCGGCCCTGCCCCGCACCGTCGACCTCGCCGACCAGGGCTTCCTCTGGTTGCA CTCCGACCCCGACGGACCCGGCGGCTACGCCCGCATCGTCGCCGACACTGCCGACACTGCCGACACTGCCGACTCCGCCG ACACTGCCGAGTCCGGCGGTGCGCCGGAGGGGCAGTCGGGCGCGCTGGTGCGCACGGTGTCGCTCACGGTGCGGCAGATC CTCGCCTGA
Upstream 100 bases:
>100_bases GCGTCGCAGTTTATTGTGGTCCTACCGATGCCGCGGTGCGTCGATCACCCCGGGGCGGGTGCGACGGGGGAACGCCGCCG CGGCGCAACGAGGATGGTTT
Downstream 100 bases:
>100_bases GCACAGCGTGCCGCCGCCTCCGGCCGCCGACCTGCTCAGGAGGCTGTGCTGAATTTCGCCTGAGCGGGGCGGCCTGCGTG GTGATGCTGCGCTGCCGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: 7,8-dihydro-8-oxoguanine-triphosphatase; 8-oxo-dGTPase; dGTP pyrophosphohydrolase [H]
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MMRGDGDGWSEGPDGLRHWGKYGAAGLLLRAPLAGGGSAVLLQHRAPWSHQGGTWALPGGAKDSHESSVHAAVREAWEEA GIDPTAVRVRAERVTASALSGWTYTTVVADTDQTLRTSRDRESLELAWVPEDEVTDRPLHPGFAAAWPALRATPARACLS ELDDADTVAAALPRTVDLADQGFLWLHSDPDGPGGYARIVADTADTADTADSADTAESGGAPEGQSGALVRTVSLTVRQI LA
Sequences:
>Translated_242_residues MMRGDGDGWSEGPDGLRHWGKYGAAGLLLRAPLAGGGSAVLLQHRAPWSHQGGTWALPGGAKDSHESSVHAAVREAWEEA GIDPTAVRVRAERVTASALSGWTYTTVVADTDQTLRTSRDRESLELAWVPEDEVTDRPLHPGFAAAWPALRATPARACLS ELDDADTVAAALPRTVDLADQGFLWLHSDPDGPGGYARIVADTADTADTADSADTAESGGAPEGQSGALVRTVSLTVRQI LA >Mature_242_residues MMRGDGDGWSEGPDGLRHWGKYGAAGLLLRAPLAGGGSAVLLQHRAPWSHQGGTWALPGGAKDSHESSVHAAVREAWEEA GIDPTAVRVRAERVTASALSGWTYTTVVADTDQTLRTSRDRESLELAWVPEDEVTDRPLHPGFAAAWPALRATPARACLS ELDDADTVAAALPRTVDLADQGFLWLHSDPDGPGGYARIVADTADTADTADSADTAESGGAPEGQSGALVRTVSLTVRQI LA
Specific function: May be involved in the GO system responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8- oxoguanine, 8-oxo-dGTP) from DNA and the nucleotide pool. 8-oxo- dGTP is inserted opposite dA and dC residues of template DNA with almost equa
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 nudix hydrolase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020476 - InterPro: IPR020084 - InterPro: IPR000086 - InterPro: IPR015797 [H]
Pfam domain/function: PF00293 NUDIX [H]
EC number: NA
Molecular weight: Translated: 25379; Mature: 25379
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRGDGDGWSEGPDGLRHWGKYGAAGLLLRAPLAGGGSAVLLQHRAPWSHQGGTWALPGG CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEEECCCC AKDSHESSVHAAVREAWEEAGIDPTAVRVRAERVTASALSGWTYTTVVADTDQTLRTSRD CCCCHHHHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCCCEEEEEEECCCHHHHHCCC RESLELAWVPEDEVTDRPLHPGFAAAWPALRATPARACLSELDDADTVAAALPRTVDLAD CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCCCEEECC QGFLWLHSDPDGPGGYARIVADTADTADTADSADTAESGGAPEGQSGALVRTVSLTVRQI CCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCEEEHHHHHHHHH LA HC >Mature Secondary Structure MMRGDGDGWSEGPDGLRHWGKYGAAGLLLRAPLAGGGSAVLLQHRAPWSHQGGTWALPGG CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEEECCCC AKDSHESSVHAAVREAWEEAGIDPTAVRVRAERVTASALSGWTYTTVVADTDQTLRTSRD CCCCHHHHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCCCEEEEEEECCCHHHHHCCC RESLELAWVPEDEVTDRPLHPGFAAAWPALRATPARACLSELDDADTVAAALPRTVDLAD CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCCCEEECC QGFLWLHSDPDGPGGYARIVADTADTADTADSADTAESGGAPEGQSGALVRTVSLTVRQI CCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCEEEHHHHHHHHH LA HC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]