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The map label for this gene is 54026962

Identifier: 54026962

GI number: 54026962

Start: 5202202

End: 5203818

Strand: Reverse

Name: 54026962

Synonym: nfa49880

Alternate gene names: NA

Gene position: 5203818-5202202 (Counterclockwise)

Preceding gene: 54026963

Following gene: 54026961

Centisome position: 86.42

GC content: 72.91

Gene sequence:

>1617_bases
ATGAGCTCCCCCAGAAACTCGCTCGTCCGCTGGACCGGGGAATCGCCTGCGGAGCCGGAGCCCGCCGTGCGTAGCGGGCC
TGCCACCGAGGAGCCGGGTTTCCTGTCGCTGACGCCCGAGCGGGCCAGGGTGCTGCTGTTCGTCGCGGCGCGGCCCGCGG
CGCTGGCGCTGCTGGTGGTCACCGTGCTCGTCGTGTCGACCCTGCTGACCTCCGGTGGCGCGATGACCGGCACGTCGGCC
GCGATCGCGGCGAGCTGGCTCGGCATGCACCAGGTCCCGCTGGAGGTCGGCAAGACGACGCTCGGTCTGTTGCCGCTGCT
GCCGACCGCGGTGTTGCTCTGGGCCGCCGCCCGCGAATGTGCCAGGGCCGCGGTGCCCAACGGCACCCGCACCGACCTGG
CCTGGCTGCTCGGCGCGGCGCTGGGCGGTCCGCTGCTGGTGACCGCGGTCTGCCTGGCCGTGGTCACCGACGCCTCCGGC
GTGCTGCCGGTGCGGCCCCCGAACACGCTGGCCGCGTTCGCCTGGGTGCTCGGACTGCACCTGCTGGCCGCGGGCGCGGG
GATCGCGAGCCGAGAACTGCCGCGGGTGGTCGACACCCTGCGGTTACCGCCGTGGGCGGTGTCCGGCATCCGGGGCGCCG
GGCGCTCGCTGGTGCGGCTGCTGGCCTGCGCCGCCGCGGTCACCGTGATCTCGTTGTTCGCGCATTACTCGACCATCGGC
GACATCTACGGCGGTGCGGGCGACGGATGGGGTGTGCTGGGGCTGACCGTGCTGTCGGTGCTCTACATGCCCAACGTCGT
GATCGGCGCCCTCGGCGTGTTGCTCGGCGCCACCGCCGAGTTCGGCACGGCCTCGGTCGGCCTGTTCTCCGTGGTCGGCG
GTCCGGTCCCGGCGGTGCCGGTGCTGGCGGCGATGCCGATGGGCCCGGCCGCCGGGTGGTGGGCGCTGTTGCTGGTGGTA
CCCGCCGCGGTCGGTGTCCTGGGTGGCCTCGATCTGGCCCGGCTGACCCGGGACGAGATCCGCGCACCCTGGGCCACGCT
CACCTCGGCGGCGGTGACCACCGTGCTGCTGCTCGTCGCGGCCGTCCTGGCCGGTGGCGAGCTGGGTGGTTTCGGGCACG
TCGGGCTGGACCTGCCGATCCTGGCGGCGGCCGGTTTCGGCTGGCTCGCGGTGACCGGGTGGATCGGGTTGACCGCCGCG
CGGTTGTTCCCCGGCCGGACCGCGACCGCCGGCGGTGACCACCACGCGGACGAGCACGACGACTATTACGACGACGAGCA
CGACTACTACGGCGACGACCGCTACGACGACGATCACTACGAGGACGATCACTACGAGGACGATCACTACGAGGACCACG
ACGACGGCGAGTACTACGCGGACGACGAGCACTACGACGACGAGCACTACGGCGACGATGCCCGTGCGGCGGACGACGAC
TCCGGCGAGGACGGCCACCACGACGACCGCGATCGCCGGGACCGGTTCGCCGCCGACGAGTCCGAGACCCTCGAGGGCGA
ACTCGTCGACGAGCCCGTCGCGCTCGCCGGACCGCGCCGCGACCACGACGCCGACATCGTGGACGCCGAAGTGGTGGAAT
CCGAGACCGACCGCTGA

Upstream 100 bases:

>100_bases
TAGTTCGTTCTTCCTCCGCGAGCACCCGGCCCGAACCAGGGCGGGTGCTCGCGGCGCGCCTGCCCCGATCCCGTCGCGAA
GGCTGTCACGCTGAATCTCC

Downstream 100 bases:

>100_bases
GTGCCGCCGCACCCCGTGGCGGGAACGGATCGTGTGCGCGCAGGGCGCTCCGCTCGGGCGAAGCGGGCACCGCTAGGCTG
ATCACCGGCGGTGATGTCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 537

Protein sequence:

>538_residues
MSSPRNSLVRWTGESPAEPEPAVRSGPATEEPGFLSLTPERARVLLFVAARPAALALLVVTVLVVSTLLTSGGAMTGTSA
AIAASWLGMHQVPLEVGKTTLGLLPLLPTAVLLWAAARECARAAVPNGTRTDLAWLLGAALGGPLLVTAVCLAVVTDASG
VLPVRPPNTLAAFAWVLGLHLLAAGAGIASRELPRVVDTLRLPPWAVSGIRGAGRSLVRLLACAAAVTVISLFAHYSTIG
DIYGGAGDGWGVLGLTVLSVLYMPNVVIGALGVLLGATAEFGTASVGLFSVVGGPVPAVPVLAAMPMGPAAGWWALLLVV
PAAVGVLGGLDLARLTRDEIRAPWATLTSAAVTTVLLLVAAVLAGGELGGFGHVGLDLPILAAAGFGWLAVTGWIGLTAA
RLFPGRTATAGGDHHADEHDDYYDDEHDYYGDDRYDDDHYEDDHYEDDHYEDHDDGEYYADDEHYDDEHYGDDARAADDD
SGEDGHHDDRDRRDRFAADESETLEGELVDEPVALAGPRRDHDADIVDAEVVESETDR

Sequences:

>Translated_538_residues
MSSPRNSLVRWTGESPAEPEPAVRSGPATEEPGFLSLTPERARVLLFVAARPAALALLVVTVLVVSTLLTSGGAMTGTSA
AIAASWLGMHQVPLEVGKTTLGLLPLLPTAVLLWAAARECARAAVPNGTRTDLAWLLGAALGGPLLVTAVCLAVVTDASG
VLPVRPPNTLAAFAWVLGLHLLAAGAGIASRELPRVVDTLRLPPWAVSGIRGAGRSLVRLLACAAAVTVISLFAHYSTIG
DIYGGAGDGWGVLGLTVLSVLYMPNVVIGALGVLLGATAEFGTASVGLFSVVGGPVPAVPVLAAMPMGPAAGWWALLLVV
PAAVGVLGGLDLARLTRDEIRAPWATLTSAAVTTVLLLVAAVLAGGELGGFGHVGLDLPILAAAGFGWLAVTGWIGLTAA
RLFPGRTATAGGDHHADEHDDYYDDEHDYYGDDRYDDDHYEDDHYEDDHYEDHDDGEYYADDEHYDDEHYGDDARAADDD
SGEDGHHDDRDRRDRFAADESETLEGELVDEPVALAGPRRDHDADIVDAEVVESETDR
>Mature_537_residues
SSPRNSLVRWTGESPAEPEPAVRSGPATEEPGFLSLTPERARVLLFVAARPAALALLVVTVLVVSTLLTSGGAMTGTSAA
IAASWLGMHQVPLEVGKTTLGLLPLLPTAVLLWAAARECARAAVPNGTRTDLAWLLGAALGGPLLVTAVCLAVVTDASGV
LPVRPPNTLAAFAWVLGLHLLAAGAGIASRELPRVVDTLRLPPWAVSGIRGAGRSLVRLLACAAAVTVISLFAHYSTIGD
IYGGAGDGWGVLGLTVLSVLYMPNVVIGALGVLLGATAEFGTASVGLFSVVGGPVPAVPVLAAMPMGPAAGWWALLLVVP
AAVGVLGGLDLARLTRDEIRAPWATLTSAAVTTVLLLVAAVLAGGELGGFGHVGLDLPILAAAGFGWLAVTGWIGLTAAR
LFPGRTATAGGDHHADEHDDYYDDEHDYYGDDRYDDDHYEDDHYEDDHYEDHDDGEYYADDEHYDDEHYGDDARAADDDS
GEDGHHDDRDRRDRFAADESETLEGELVDEPVALAGPRRDHDADIVDAEVVESETDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56274; Mature: 56143

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPRNSLVRWTGESPAEPEPAVRSGPATEEPGFLSLTPERARVLLFVAARPAALALLVV
CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCHHHHHHHHH
TVLVVSTLLTSGGAMTGTSAAIAASWLGMHQVPLEVGKTTLGLLPLLPTAVLLWAAAREC
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
ARAAVPNGTRTDLAWLLGAALGGPLLVTAVCLAVVTDASGVLPVRPPNTLAAFAWVLGLH
HHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHH
LLAAGAGIASRELPRVVDTLRLPPWAVSGIRGAGRSLVRLLACAAAVTVISLFAHYSTIG
HHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIYGGAGDGWGVLGLTVLSVLYMPNVVIGALGVLLGATAEFGTASVGLFSVVGGPVPAVP
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHH
VLAAMPMGPAAGWWALLLVVPAAVGVLGGLDLARLTRDEIRAPWATLTSAAVTTVLLLVA
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AVLAGGELGGFGHVGLDLPILAAAGFGWLAVTGWIGLTAARLFPGRTATAGGDHHADEHD
HHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DYYDDEHDYYGDDRYDDDHYEDDHYEDDHYEDHDDGEYYADDEHYDDEHYGDDARAADDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHCCCCCCCCCCC
SGEDGHHDDRDRRDRFAADESETLEGELVDEPVALAGPRRDHDADIVDAEVVESETDR
CCCCCCCCCHHHHHHHCCCCCCCCCCHHCCCCHHHCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
SSPRNSLVRWTGESPAEPEPAVRSGPATEEPGFLSLTPERARVLLFVAARPAALALLVV
CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCHHHHHHHHH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CCCCCCCCCHHHHHHHCCCCCCCCCCHHCCCCHHHCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]