| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026963
Identifier: 54026963
GI number: 54026963
Start: 5203916
End: 5204992
Strand: Reverse
Name: 54026963
Synonym: nfa49890
Alternate gene names: NA
Gene position: 5204992-5203916 (Counterclockwise)
Preceding gene: 54026964
Following gene: 54026962
Centisome position: 86.44
GC content: 73.26
Gene sequence:
>1077_bases ATGTCATACCCGACCGGGGGCTCCGGGTACAACACACCCGCGACGCCCTCCGCACCATCCGGTTCCGGCCAGTCGACCGG TGGCGGCACCGGCGCGAGCGCGACCGGTTCCGCGGCGGCTCCCGCGGCGAAGGGGTTGCCGTTCTTCCTGGTGGTCGGCG TCGCCGCGCTCGGCGTGATCAACTTCCTGCTCGGCTTCCTGCCGTTCGTGGAGCCGGAAGCCACCAACCCGATGACCGGT GCGCGGGTGACCGGCGATTCGATCAACGCGTTCGCCACGCTCGGCCTGGCCGGCCTGCTGGCGATGCTGCTGCTCGGCGG TCTGCTGGCGGCGCTGTCGATCCTGCCCGGCCAGGACTGGAAGGGCGCGGCCGCCGCGGCGTCGGCGGCGGGCTTCCTGG CGCTGCTGTTCCAGTCCTTCTCACTGCCCGAGGGCGCGGGCGCCGCGTTCGGCTTCTGGGTGGTGCTGTTCCTGGCGCTG GTGCAGACCGCGCTCGCGGTCGCCGCGGTGCTGTTCGCCGCGGGCATCCTCAAGCCGCCTGCGCCGAAACCGGCGGCACC GCAGGCTCCGCAGCAGGGTGGCTACGGCCAGCAGGGCGGCTACGGTGCCCCCTCGTACGGCCAGCAGCCCGGTTACGGCC AGCAGTCGCCGTACGGCCAGAGCCAGCAGCCGTCCTACGGCCAGCAGCCGGGCTACGGCACCGGCCCCCAGTACCAGCAG CCCCAGCAGCCCTACGGCCAGAGCCAGCCGGGCCAGTCGCCCTACGGCCAGCAGCCCGGGTACGGTCAGCAGCCCGGCCA ATCCTACGGTCAGCAGCCGGGTTATGGTGCGCCGCAACAGTCTTCGCCCTACGCGAGCGGCGCGCAGCCCCGTCCGGACG AGAGTGCCACCCAGCACTTCGGTGGCCAGGCCGGTCAGCAGTACGGCCAGCAGGGGTACGGCCAGGCCCAGCAGCAGCCG GCGCAGCCCGGCCAGCAGGCGGGGCAGCAGCAGGGGCAGCCGTTCGGCGGTGAGAAGAGCGCCGACCCGGCCGCCGACGC CACCCAGGCGTTCCGGCCCAACGACGACAACAAGTAG
Upstream 100 bases:
>100_bases CGAACGGTGCTGTTCGGTCGAGGATGACCGGGGCGGGCGCGTGCAGTAGCGTCAGAAGCAATCCAGCCGAAGTTAACGAC TCGACCTAGGAGACGACGAC
Downstream 100 bases:
>100_bases TTCGTTCTTCCTCCGCGAGCACCCGGCCCGAACCAGGGCGGGTGCTCGCGGCGCGCCTGCCCCGATCCCGTCGCGAAGGC TGTCACGCTGAATCTCCATG
Product: antigen 34 kDa family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MSYPTGGSGYNTPATPSAPSGSGQSTGGGTGASATGSAAAPAAKGLPFFLVVGVAALGVINFLLGFLPFVEPEATNPMTG ARVTGDSINAFATLGLAGLLAMLLLGGLLAALSILPGQDWKGAAAAASAAGFLALLFQSFSLPEGAGAAFGFWVVLFLAL VQTALAVAAVLFAAGILKPPAPKPAAPQAPQQGGYGQQGGYGAPSYGQQPGYGQQSPYGQSQQPSYGQQPGYGTGPQYQQ PQQPYGQSQPGQSPYGQQPGYGQQPGQSYGQQPGYGAPQQSSPYASGAQPRPDESATQHFGGQAGQQYGQQGYGQAQQQP AQPGQQAGQQQGQPFGGEKSADPAADATQAFRPNDDNK
Sequences:
>Translated_358_residues MSYPTGGSGYNTPATPSAPSGSGQSTGGGTGASATGSAAAPAAKGLPFFLVVGVAALGVINFLLGFLPFVEPEATNPMTG ARVTGDSINAFATLGLAGLLAMLLLGGLLAALSILPGQDWKGAAAAASAAGFLALLFQSFSLPEGAGAAFGFWVVLFLAL VQTALAVAAVLFAAGILKPPAPKPAAPQAPQQGGYGQQGGYGAPSYGQQPGYGQQSPYGQSQQPSYGQQPGYGTGPQYQQ PQQPYGQSQPGQSPYGQQPGYGQQPGQSYGQQPGYGAPQQSSPYASGAQPRPDESATQHFGGQAGQQYGQQGYGQAQQQP AQPGQQAGQQQGQPFGGEKSADPAADATQAFRPNDDNK >Mature_357_residues SYPTGGSGYNTPATPSAPSGSGQSTGGGTGASATGSAAAPAAKGLPFFLVVGVAALGVINFLLGFLPFVEPEATNPMTGA RVTGDSINAFATLGLAGLLAMLLLGGLLAALSILPGQDWKGAAAAASAAGFLALLFQSFSLPEGAGAAFGFWVVLFLALV QTALAVAAVLFAAGILKPPAPKPAAPQAPQQGGYGQQGGYGAPSYGQQPGYGQQSPYGQSQQPSYGQQPGYGTGPQYQQP QQPYGQSQPGQSPYGQQPGYGQQPGQSYGQQPGYGAPQQSSPYASGAQPRPDESATQHFGGQAGQQYGQQGYGQAQQQPA QPGQQAGQQQGQPFGGEKSADPAADATQAFRPNDDNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35931; Mature: 35800
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYPTGGSGYNTPATPSAPSGSGQSTGGGTGASATGSAAAPAAKGLPFFLVVGVAALGVI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH NFLLGFLPFVEPEATNPMTGARVTGDSINAFATLGLAGLLAMLLLGGLLAALSILPGQDW HHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KGAAAAASAAGFLALLFQSFSLPEGAGAAFGFWVVLFLALVQTALAVAAVLFAAGILKPP CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC APKPAAPQAPQQGGYGQQGGYGAPSYGQQPGYGQQSPYGQSQQPSYGQQPGYGTGPQYQQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PQQPYGQSQPGQSPYGQQPGYGQQPGQSYGQQPGYGAPQQSSPYASGAQPRPDESATQHF CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH GGQAGQQYGQQGYGQAQQQPAQPGQQAGQQQGQPFGGEKSADPAADATQAFRPNDDNK CCHHHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCC >Mature Secondary Structure SYPTGGSGYNTPATPSAPSGSGQSTGGGTGASATGSAAAPAAKGLPFFLVVGVAALGVI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH NFLLGFLPFVEPEATNPMTGARVTGDSINAFATLGLAGLLAMLLLGGLLAALSILPGQDW HHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KGAAAAASAAGFLALLFQSFSLPEGAGAAFGFWVVLFLALVQTALAVAAVLFAAGILKPP CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC APKPAAPQAPQQGGYGQQGGYGAPSYGQQPGYGQQSPYGQSQQPSYGQQPGYGTGPQYQQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PQQPYGQSQPGQSPYGQQPGYGQQPGQSYGQQPGYGAPQQSSPYASGAQPRPDESATQHF CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH GGQAGQQYGQQGYGQAQQQPAQPGQQAGQQQGQPFGGEKSADPAADATQAFRPNDDNK CCHHHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA