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The map label for this gene is ygaU [C]

Identifier: 54026958

GI number: 54026958

Start: 5198544

End: 5199182

Strand: Reverse

Name: ygaU [C]

Synonym: nfa49840

Alternate gene names: 54026958

Gene position: 5199182-5198544 (Counterclockwise)

Preceding gene: 54026960

Following gene: 54026948

Centisome position: 86.35

GC content: 69.33

Gene sequence:

>639_bases
ATGGGCTTTCGGCTCGCATCGCAAGTCGGATGCTGTGCACAGAAAATCTTCGAAAGGAACAACGTGGGCGACACGCTGCG
CGTAGGCGAAGAACTCGGACTCGGTCAGTCCCTGACCGGAGGTGCCTACACCCTGACCCTGCAGCCGGACGGCAACCTCG
TGCTGTCCGAGCCCGGCGGAAACGTCGTGTGGGCCACCCAGACCCACGATCAGGGCGTCGACAAGGCCGTCCTGCAGCAC
GACGGCAACTTCGTGCTCTACAAGGGTGCCGACGCCGCGTGGTCCACCGAGACCAACGGCAAGAGCGCCGATCGCCTGGT
CGTGCAGGCCGACCGCAACGTCGTGCTGTACGGCACCGACGGCGCCGCGCTGTGGGCGTCGGGCACCAACACCGACAACC
CGCTGCCCGCCCCGGAACAGCAGGCCGAGCAGGCGCCCGCCGCCGCGCCGGTCGAGGACGTGCCCCCGCCGCCGCCCGCG
CCGCAGCCGCGCACCTACACCGTGGAGCCGGGCGACACCCTGTGGGCGATCGCCGAGCGCTTCTACGGCGACGGCAACCG
CTACCAGGAGATTGCCGACGCCAGCGGCATCCCGAACCCGGACGCGATCAACCCCGGTCAGGTGCTGACCATTCCGTGA

Upstream 100 bases:

>100_bases
CCGGCGCGTGACGGCCCCCACAGTGAACATTCCGCGAACCCTGCGCGTAATGCCTCCCGGTGGCGGGCGCGGACTGTAGA
TTCTGCGTTCGGTGCGGGCC

Downstream 100 bases:

>100_bases
TCCGCGGCCGCGCGACAGCGTGAAACCGGCAGGGCCTCCGGGGATTTCCCGGAGGCCCTGCCGCTGTCCACCCTCAGTAC
CGCATGGCGTAGGAGATCTT

Product: hypothetical protein

Products: NA

Alternate protein names: Curculin Domain Protein Lectin; Mannose-Specific Lectin; NLP/P60 Protein

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MGFRLASQVGCCAQKIFERNNVGDTLRVGEELGLGQSLTGGAYTLTLQPDGNLVLSEPGGNVVWATQTHDQGVDKAVLQH
DGNFVLYKGADAAWSTETNGKSADRLVVQADRNVVLYGTDGAALWASGTNTDNPLPAPEQQAEQAPAAAPVEDVPPPPPA
PQPRTYTVEPGDTLWAIAERFYGDGNRYQEIADASGIPNPDAINPGQVLTIP

Sequences:

>Translated_212_residues
MGFRLASQVGCCAQKIFERNNVGDTLRVGEELGLGQSLTGGAYTLTLQPDGNLVLSEPGGNVVWATQTHDQGVDKAVLQH
DGNFVLYKGADAAWSTETNGKSADRLVVQADRNVVLYGTDGAALWASGTNTDNPLPAPEQQAEQAPAAAPVEDVPPPPPA
PQPRTYTVEPGDTLWAIAERFYGDGNRYQEIADASGIPNPDAINPGQVLTIP
>Mature_211_residues
GFRLASQVGCCAQKIFERNNVGDTLRVGEELGLGQSLTGGAYTLTLQPDGNLVLSEPGGNVVWATQTHDQGVDKAVLQHD
GNFVLYKGADAAWSTETNGKSADRLVVQADRNVVLYGTDGAALWASGTNTDNPLPAPEQQAEQAPAAAPVEDVPPPPPAP
QPRTYTVEPGDTLWAIAERFYGDGNRYQEIADASGIPNPDAINPGQVLTIP

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22363; Mature: 22232

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: PS50927 BULB_LECTIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFRLASQVGCCAQKIFERNNVGDTLRVGEELGLGQSLTGGAYTLTLQPDGNLVLSEPGG
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECCCC
NVVWATQTHDQGVDKAVLQHDGNFVLYKGADAAWSTETNGKSADRLVVQADRNVVLYGTD
CEEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEECC
GAALWASGTNTDNPLPAPEQQAEQAPAAAPVEDVPPPPPAPQPRTYTVEPGDTLWAIAER
CCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHH
FYGDGNRYQEIADASGIPNPDAINPGQVLTIP
HHCCCCHHHHHHHCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
GFRLASQVGCCAQKIFERNNVGDTLRVGEELGLGQSLTGGAYTLTLQPDGNLVLSEPGG
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECCCC
NVVWATQTHDQGVDKAVLQHDGNFVLYKGADAAWSTETNGKSADRLVVQADRNVVLYGTD
CEEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEECC
GAALWASGTNTDNPLPAPEQQAEQAPAAAPVEDVPPPPPAPQPRTYTVEPGDTLWAIAER
CCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHH
FYGDGNRYQEIADASGIPNPDAINPGQVLTIP
HHCCCCHHHHHHHCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA