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The map label for this gene is rpmE2

Identifier: 54026947

GI number: 54026947

Start: 5187722

End: 5187988

Strand: Reverse

Name: rpmE2

Synonym: nfa49730

Alternate gene names: 54026947

Gene position: 5187988-5187722 (Counterclockwise)

Preceding gene: 54026948

Following gene: 54026946

Centisome position: 86.16

GC content: 68.91

Gene sequence:

>267_bases
ATGAAGGCGGGCATCCACCCCGACTACCACCCCGTGGTGTTCGAGGACTCGAGCACCGGCAAGCGCTTCCTCACCAGATC
GACCGCGACGAGCGAGCGCACCGTGGAGTGGACCGACGGCAACACCTACCCCCTGCTGGTGGTGGACGTGACCGCGGACT
CGCATCCGTTCTGGACCGGCGCCCAGCGCCTGCTGGACACCCAGGGGCGGGTGGAGAAGTTCAACCGCAAGTACGGGCGC
CGGGTGCGCGGCGGACAGGAGGGCTGA

Upstream 100 bases:

>100_bases
GGGAGGACCCGTTCGGCGAGTGGCACGAGGAACCGTGCGCCGACCCGGGCGAACCGATCGAGGACATCGCGTGGCCGAAA
GGCCGGACAGGAGAAGGACA

Downstream 100 bases:

>100_bases
GATGGCGGTTCCGAAGCGGCGGATGTCGAGGTCGAACACGCGCAGCAGGCGCAGCCAGTGGAAGGCGAAGGCGCCGGACC
TGGTCGAGGTGACCGTCGCG

Product: 50S ribosomal protein L31 type B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MKAGIHPDYHPVVFEDSSTGKRFLTRSTATSERTVEWTDGNTYPLLVVDVTADSHPFWTGAQRLLDTQGRVEKFNRKYGR
RVRGGQEG

Sequences:

>Translated_88_residues
MKAGIHPDYHPVVFEDSSTGKRFLTRSTATSERTVEWTDGNTYPLLVVDVTADSHPFWTGAQRLLDTQGRVEKFNRKYGR
RVRGGQEG
>Mature_88_residues
MKAGIHPDYHPVVFEDSSTGKRFLTRSTATSERTVEWTDGNTYPLLVVDVTADSHPFWTGAQRLLDTQGRVEKFNRKYGR
RVRGGQEG

Specific function: Unknown

COG id: COG0254

COG function: function code J; Ribosomal protein L31

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L31P family. Type B subfamily

Homologues:

Organism=Escherichia coli, GI2367109, Length=82, Percent_Identity=43.9024390243902, Blast_Score=77, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL31B_NOCFA (Q5YPR6)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_121189.1
- ProteinModelPortal:   Q5YPR6
- SMR:   Q5YPR6
- GeneID:   3111496
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa49730
- NMPDR:   fig|247156.1.peg.4780
- HOGENOM:   HBG610087
- OMA:   TVEWTDG
- ProtClustDB:   PRK01678
- BioCyc:   NFAR247156:NFA49730-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00502
- InterPro:   IPR002150
- PRINTS:   PR01249
- TIGRFAMs:   TIGR00105

Pfam domain/function: PF01197 Ribosomal_L31

EC number: NA

Molecular weight: Translated: 9983; Mature: 9983

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS01143 RIBOSOMAL_L31

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAGIHPDYHPVVFEDSSTGKRFLTRSTATSERTVEWTDGNTYPLLVVDVTADSHPFWTG
CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHH
AQRLLDTQGRVEKFNRKYGRRVRGGQEG
HHHHHCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKAGIHPDYHPVVFEDSSTGKRFLTRSTATSERTVEWTDGNTYPLLVVDVTADSHPFWTG
CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHH
AQRLLDTQGRVEKFNRKYGRRVRGGQEG
HHHHHCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA