| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is nirB [H]
Identifier: 54026534
GI number: 54026534
Start: 4740765
End: 4743314
Strand: Reverse
Name: nirB [H]
Synonym: nfa45610
Alternate gene names: 54026534
Gene position: 4743314-4740765 (Counterclockwise)
Preceding gene: 54026535
Following gene: 54026533
Centisome position: 78.78
GC content: 70.67
Gene sequence:
>2550_bases ATGAACCCCGCAACCACCGAGCGCAAGACCGTGGTGGTCGTCGGCCACGGCATGGTCGGGCACCGCTTCGTCGAGGCGCT TCGCTCCCGCGACGAGTCCGGCACCTGGCAGGTCGTGATCCTGAGCGAGGAACGGCTGCCCGCCTACGACCGGGTCGGGC TCTCGTCCTACGTCGGCGCCTGGGACCCGGCCGCGCTGGCGCTGCCCGGCAACGACTACGCCGGTGACGAGCTGGTGGAG CTGCGGCTCGGCCAGCGCGCCGAGGCCATCGACCGGCAGGCGCGCAAGGTCACCACCGCCACCGGCGAGACCATCGGCTA CGACGCGCTGGTGCTGGCCACCGGCTCCTACGCCTTCGTCCCGCCGGTGCCCGGCCACGACCTCGACGGCTGCTTCGTCT ACCGCACCATCGACGACCTGGACGGCATCCGCGCCACCGCCGAGGCGGCCGGGCCCGGTGCGCACGGCGTGGTCATCGGC GGTGGCCTGCTCGGCCTGGAGGCGGCCAACGCGCTCAAGCTGCTCGGGATGACCCCGCACGTCATCGAATACAACAACCG CCTGATGCCCGCCCAGGTCGACGAGGGCGGCGGCGCCATCCTCGAGCGCCTGGTGACCGATCTCGGCCTGACCGTGCACA CCGGTGTGGGCACGCAGTCCATCGAGCGCGCCGAGGACGGCACGCTGCGGCTGACGCTGTCCGACGACTCCACCATCGAT GCCTCGATGGTGGTGTTCTCCGCGGGCATCCGCCCCAACGACCGGATCGCCCGCGAAGCCGGGCTCGAGGTCGGCCCGCG CGGCGGCATCGTCACCGACCTGTCGCTGCAGACCTCCGACCCGAACATCTGGGCCGTCGGCGAATGCGCCGCGGTCGAGG GCACCTGCTACGGCCTGGTCGCCCCCGGCTACACCACCGCCGAGATCGTCGCCGACCGCCTGCTGGGCGGCCGGGGCGAA TTCCCGGGCGCCGACATGTCCACCAAGCTCAAGCTGATGGGCGTGGACGTGGCCAGCTTCGGCGACGCGCACGGCGTCAC CGAGGGCGCGCTCTCGGTGGTGCTGCACGACGCCGCCAAGGGCACCTACGCCAAACTCGTCGTCTCCGACGACGCCACGA CCCTGCTGGGCGGCATCCTGGTCGGCGACGCCAGCCAGTACGCCGCGCTGCGCCCGCTCGTCGGCCGCCCGCTGCCCGCC GCACCGGCGGCGCTGATCTCGCCCGCCGGCGCGGAACTGGGCGCCGACGCGCTGCCCGACGACGCGCAGATCTGCTCCTG CAACAACGTCTCCAAGGGCGCGATCTGCGGCGCGATCGCCGAGGGCGCCTGCGACATCCCCGCGATCAAGAGCTGCACCA CCGCGGGCACCTCCTGCGGCGGCTGCGTGCCGATGCTGAAGAAGCTGCTCGAGCAGTCCGGCGTGGCGATGTCCAAGGCG CTGTGCGAGCACTTCGAGCAGTCGCGCGCCGAACTGTTCCAGATCGTCCAGGTGACCGGCATCCGCACCTTCTCCGGCCT GATCGCCAAGTACGGCAAGGGCAGCGGCTGCGACATCTGCAAGCCGACCGTGGCCTCCATCCTGGCCTCGACCTCGAGCG ATCACATCCTCGACGGCGAGATGGCCGCGCTACAGGACACCAACGACCACTTCCTGGCCAACCTGCAGAAGAACGGCACC TACTCGGTGGTGCCGCGGATGCCCGGCGGCGAGGTCACCGCCGAGCAGCTGATCACCATCGGCGAGGTGGCCAAGGAGTT CGGCCTCTACGTCAAGGTCACCGGCGGCCAGCGCATCGACCTGTTCGGGGCGCGGGTGGAGCAGCTGCCGCGGATCTGGC AGCGGCTGGTGGACGCGGGCATGGAATCCGGCCACGCCTACGGCAAGTCGTTGCGCACCGTGAAGAGCTGCGTGGGCTCC ACCTGGTGCCGCTACGGCCAGCAGGACTCGGTGGGCATGGCGGTGCTGCTCGAAAAGCGTTACCGCGGACTGCGTTCCCC GCACAAGCTGAAGCTGGCGGTGTCGGGCTGCGCCCGCGAATGCGCCGAGGCCCGCGGCAAGGACGTCGGCGTGATCGCCA CCGAGAACGGCTGGAACCTCTACGTCGGCGGCAACGGTGGCCTGACCCCCAAGCACGCGGTGCTGCTGGCCGGCGAACTC GACGACGAGACGCTGATCCGCTACATCGACCGCTATCTGATGTTCTACATCCGCACCGCCGACCGGCTGCAGCGCACGGC GCCCTGGCAGGAGGCGCTCGAGGGCGGCATCGACTACCTGAAGCAGGTGATCTGCGAGGACAGCCTCGGCATCGCCGACG AGCTGGAGGCGGCGATGGCCCGCCACGTCGAGGGGTACAAGGACGAATGGGCCGCGGTGCTCGAGGACGAGGAGAAGCTC GCCCGCTTCGTCTCCTTCGTCAACGCGCCGGAGGAGGCCGATCCGACCATCGCCTTCGACGACAGCGGTGAGCGCAAGGT GCCGGTGCTGCTCGGCATGCCGGAGGTGGCGCCCCGCGTGGAATCCGTCACAGCCGCGCAGGCGAAATAA
Upstream 100 bases:
>100_bases GCCGAGGCCCTCGTTCGCCGCGCCGAACAGGCCGTTCCCGCCACCTCGTCCGTCCCGTCGGCCCGCGCCTGACGCCCGCA TCCATTCCTGGGAGGTCCAC
Downstream 100 bases:
>100_bases CGGCTTAACGACGCGGAAACAGGACGCCGGTACCAATGAACCAGGCGTTCGGAGGAGGAACCCGATGACCGTAATCGACA CACCCAGCATCTCGCCCGCC
Product: putative nitrite reductase (NAD(P)H) subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MNPATTERKTVVVVGHGMVGHRFVEALRSRDESGTWQVVILSEERLPAYDRVGLSSYVGAWDPAALALPGNDYAGDELVE LRLGQRAEAIDRQARKVTTATGETIGYDALVLATGSYAFVPPVPGHDLDGCFVYRTIDDLDGIRATAEAAGPGAHGVVIG GGLLGLEAANALKLLGMTPHVIEYNNRLMPAQVDEGGGAILERLVTDLGLTVHTGVGTQSIERAEDGTLRLTLSDDSTID ASMVVFSAGIRPNDRIAREAGLEVGPRGGIVTDLSLQTSDPNIWAVGECAAVEGTCYGLVAPGYTTAEIVADRLLGGRGE FPGADMSTKLKLMGVDVASFGDAHGVTEGALSVVLHDAAKGTYAKLVVSDDATTLLGGILVGDASQYAALRPLVGRPLPA APAALISPAGAELGADALPDDAQICSCNNVSKGAICGAIAEGACDIPAIKSCTTAGTSCGGCVPMLKKLLEQSGVAMSKA LCEHFEQSRAELFQIVQVTGIRTFSGLIAKYGKGSGCDICKPTVASILASTSSDHILDGEMAALQDTNDHFLANLQKNGT YSVVPRMPGGEVTAEQLITIGEVAKEFGLYVKVTGGQRIDLFGARVEQLPRIWQRLVDAGMESGHAYGKSLRTVKSCVGS TWCRYGQQDSVGMAVLLEKRYRGLRSPHKLKLAVSGCARECAEARGKDVGVIATENGWNLYVGGNGGLTPKHAVLLAGEL DDETLIRYIDRYLMFYIRTADRLQRTAPWQEALEGGIDYLKQVICEDSLGIADELEAAMARHVEGYKDEWAAVLEDEEKL ARFVSFVNAPEEADPTIAFDDSGERKVPVLLGMPEVAPRVESVTAAQAK
Sequences:
>Translated_849_residues MNPATTERKTVVVVGHGMVGHRFVEALRSRDESGTWQVVILSEERLPAYDRVGLSSYVGAWDPAALALPGNDYAGDELVE LRLGQRAEAIDRQARKVTTATGETIGYDALVLATGSYAFVPPVPGHDLDGCFVYRTIDDLDGIRATAEAAGPGAHGVVIG GGLLGLEAANALKLLGMTPHVIEYNNRLMPAQVDEGGGAILERLVTDLGLTVHTGVGTQSIERAEDGTLRLTLSDDSTID ASMVVFSAGIRPNDRIAREAGLEVGPRGGIVTDLSLQTSDPNIWAVGECAAVEGTCYGLVAPGYTTAEIVADRLLGGRGE FPGADMSTKLKLMGVDVASFGDAHGVTEGALSVVLHDAAKGTYAKLVVSDDATTLLGGILVGDASQYAALRPLVGRPLPA APAALISPAGAELGADALPDDAQICSCNNVSKGAICGAIAEGACDIPAIKSCTTAGTSCGGCVPMLKKLLEQSGVAMSKA LCEHFEQSRAELFQIVQVTGIRTFSGLIAKYGKGSGCDICKPTVASILASTSSDHILDGEMAALQDTNDHFLANLQKNGT YSVVPRMPGGEVTAEQLITIGEVAKEFGLYVKVTGGQRIDLFGARVEQLPRIWQRLVDAGMESGHAYGKSLRTVKSCVGS TWCRYGQQDSVGMAVLLEKRYRGLRSPHKLKLAVSGCARECAEARGKDVGVIATENGWNLYVGGNGGLTPKHAVLLAGEL DDETLIRYIDRYLMFYIRTADRLQRTAPWQEALEGGIDYLKQVICEDSLGIADELEAAMARHVEGYKDEWAAVLEDEEKL ARFVSFVNAPEEADPTIAFDDSGERKVPVLLGMPEVAPRVESVTAAQAK >Mature_849_residues MNPATTERKTVVVVGHGMVGHRFVEALRSRDESGTWQVVILSEERLPAYDRVGLSSYVGAWDPAALALPGNDYAGDELVE LRLGQRAEAIDRQARKVTTATGETIGYDALVLATGSYAFVPPVPGHDLDGCFVYRTIDDLDGIRATAEAAGPGAHGVVIG GGLLGLEAANALKLLGMTPHVIEYNNRLMPAQVDEGGGAILERLVTDLGLTVHTGVGTQSIERAEDGTLRLTLSDDSTID ASMVVFSAGIRPNDRIAREAGLEVGPRGGIVTDLSLQTSDPNIWAVGECAAVEGTCYGLVAPGYTTAEIVADRLLGGRGE FPGADMSTKLKLMGVDVASFGDAHGVTEGALSVVLHDAAKGTYAKLVVSDDATTLLGGILVGDASQYAALRPLVGRPLPA APAALISPAGAELGADALPDDAQICSCNNVSKGAICGAIAEGACDIPAIKSCTTAGTSCGGCVPMLKKLLEQSGVAMSKA LCEHFEQSRAELFQIVQVTGIRTFSGLIAKYGKGSGCDICKPTVASILASTSSDHILDGEMAALQDTNDHFLANLQKNGT YSVVPRMPGGEVTAEQLITIGEVAKEFGLYVKVTGGQRIDLFGARVEQLPRIWQRLVDAGMESGHAYGKSLRTVKSCVGS TWCRYGQQDSVGMAVLLEKRYRGLRSPHKLKLAVSGCARECAEARGKDVGVIATENGWNLYVGGNGGLTPKHAVLLAGEL DDETLIRYIDRYLMFYIRTADRLQRTAPWQEALEGGIDYLKQVICEDSLGIADELEAAMARHVEGYKDEWAAVLEDEEKL ARFVSFVNAPEEADPTIAFDDSGERKVPVLLGMPEVAPRVESVTAAQAK
Specific function: Nitrate assimilation (denitrification); second step. [C]
COG id: COG1251
COG function: function code C; NAD(P)H-nitrite reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family [H]
Homologues:
Organism=Homo sapiens, GI226437568, Length=280, Percent_Identity=25, Blast_Score=77, Evalue=8e-14, Organism=Homo sapiens, GI65787454, Length=280, Percent_Identity=25, Blast_Score=77, Evalue=8e-14, Organism=Homo sapiens, GI21389617, Length=280, Percent_Identity=25, Blast_Score=77, Evalue=9e-14, Organism=Escherichia coli, GI1789765, Length=830, Percent_Identity=49.7590361445783, Blast_Score=817, Evalue=0.0, Organism=Escherichia coli, GI1789065, Length=338, Percent_Identity=27.5147928994083, Blast_Score=114, Evalue=4e-26, Organism=Escherichia coli, GI1788892, Length=289, Percent_Identity=30.1038062283737, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1787352, Length=293, Percent_Identity=29.0102389078498, Blast_Score=63, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17559934, Length=281, Percent_Identity=25.2669039145907, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI281359715, Length=286, Percent_Identity=26.5734265734266, Blast_Score=93, Evalue=8e-19, Organism=Drosophila melanogaster, GI281359713, Length=286, Percent_Identity=26.5734265734266, Blast_Score=93, Evalue=8e-19, Organism=Drosophila melanogaster, GI24639250, Length=286, Percent_Identity=26.5734265734266, Blast_Score=93, Evalue=8e-19, Organism=Drosophila melanogaster, GI18543267, Length=286, Percent_Identity=26.5734265734266, Blast_Score=93, Evalue=8e-19, Organism=Drosophila melanogaster, GI24639252, Length=286, Percent_Identity=26.5734265734266, Blast_Score=93, Evalue=8e-19, Organism=Drosophila melanogaster, GI24639257, Length=286, Percent_Identity=26.5734265734266, Blast_Score=93, Evalue=1e-18, Organism=Drosophila melanogaster, GI24585130, Length=285, Percent_Identity=25.2631578947368, Blast_Score=86, Evalue=8e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007419 - InterPro: IPR013027 - InterPro: IPR005117 - InterPro: IPR012744 - InterPro: IPR012748 - InterPro: IPR017881 - InterPro: IPR006067 - InterPro: IPR006066 - InterPro: IPR001327 - InterPro: IPR017941 [H]
Pfam domain/function: PF04324 Fer2_BFD; PF01077 NIR_SIR; PF03460 NIR_SIR_ferr; PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.7.1.4 [H]
Molecular weight: Translated: 89671; Mature: 89671
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS00022 EGF_1 ; PS00365 NIR_SIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPATTERKTVVVVGHGMVGHRFVEALRSRDESGTWQVVILSEERLPAYDRVGLSSYVGA CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCHHHHCCC WDPAALALPGNDYAGDELVELRLGQRAEAIDRQARKVTTATGETIGYDALVLATGSYAFV CCCCEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHEEECCCCCCCCCEEEEEECCEEEE PPVPGHDLDGCFVYRTIDDLDGIRATAEAAGPGAHGVVIGGGLLGLEAANALKLLGMTPH CCCCCCCCCCEEEEEEHHHCCCCHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCC VIEYNNRLMPAQVDEGGGAILERLVTDLGLTVHTGVGTQSIERAEDGTLRLTLSDDSTID EEECCCEECCCEECCCCHHHHHHHHHHCCCEEECCCCCHHHHHCCCCEEEEEECCCCCCC ASMVVFSAGIRPNDRIAREAGLEVGPRGGIVTDLSLQTSDPNIWAVGECAAVEGTCYGLV CEEEEEECCCCCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEECCEEEECCCEEEEE APGYTTAEIVADRLLGGRGEFPGADMSTKLKLMGVDVASFGDAHGVTEGALSVVLHDAAK CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEHHHCCCCCCCHHHHHHHHHHHCCC GTYAKLVVSDDATTLLGGILVGDASQYAALRPLVGRPLPAAPAALISPAGAELGADALPD CCEEEEEECCCHHHHHHHHEECCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCC DAQICSCNNVSKGAICGAIAEGACDIPAIKSCTTAGTSCGGCVPMLKKLLEQSGVAMSKA CCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHH LCEHFEQSRAELFQIVQVTGIRTFSGLIAKYGKGSGCDICKPTVASILASTSSDHILDGE HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEECCC MAALQDTNDHFLANLQKNGTYSVVPRMPGGEVTAEQLITIGEVAKEFGLYVKVTGGQRID HHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEE LFGARVEQLPRIWQRLVDAGMESGHAYGKSLRTVKSCVGSTWCRYGQQDSVGMAVLLEKR HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH YRGLRSPHKLKLAVSGCARECAEARGKDVGVIATENGWNLYVGGNGGLTPKHAVLLAGEL HHCCCCCCEEEEEHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCEEEEECCC DDETLIRYIDRYLMFYIRTADRLQRTAPWQEALEGGIDYLKQVICEDSLGIADELEAAMA CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH RHVEGYKDEWAAVLEDEEKLARFVSFVNAPEEADPTIAFDDSGERKVPVLLGMPEVAPRV HHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEECCCHHCCHH ESVTAAQAK HHHHHCCCC >Mature Secondary Structure MNPATTERKTVVVVGHGMVGHRFVEALRSRDESGTWQVVILSEERLPAYDRVGLSSYVGA CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCHHHHCCC WDPAALALPGNDYAGDELVELRLGQRAEAIDRQARKVTTATGETIGYDALVLATGSYAFV CCCCEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHEEECCCCCCCCCEEEEEECCEEEE PPVPGHDLDGCFVYRTIDDLDGIRATAEAAGPGAHGVVIGGGLLGLEAANALKLLGMTPH CCCCCCCCCCEEEEEEHHHCCCCHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCC VIEYNNRLMPAQVDEGGGAILERLVTDLGLTVHTGVGTQSIERAEDGTLRLTLSDDSTID EEECCCEECCCEECCCCHHHHHHHHHHCCCEEECCCCCHHHHHCCCCEEEEEECCCCCCC ASMVVFSAGIRPNDRIAREAGLEVGPRGGIVTDLSLQTSDPNIWAVGECAAVEGTCYGLV CEEEEEECCCCCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEECCEEEECCCEEEEE APGYTTAEIVADRLLGGRGEFPGADMSTKLKLMGVDVASFGDAHGVTEGALSVVLHDAAK CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEHHHCCCCCCCHHHHHHHHHHHCCC GTYAKLVVSDDATTLLGGILVGDASQYAALRPLVGRPLPAAPAALISPAGAELGADALPD CCEEEEEECCCHHHHHHHHEECCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCC DAQICSCNNVSKGAICGAIAEGACDIPAIKSCTTAGTSCGGCVPMLKKLLEQSGVAMSKA CCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHH LCEHFEQSRAELFQIVQVTGIRTFSGLIAKYGKGSGCDICKPTVASILASTSSDHILDGE HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEECCC MAALQDTNDHFLANLQKNGTYSVVPRMPGGEVTAEQLITIGEVAKEFGLYVKVTGGQRID HHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEE LFGARVEQLPRIWQRLVDAGMESGHAYGKSLRTVKSCVGSTWCRYGQQDSVGMAVLLEKR HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH YRGLRSPHKLKLAVSGCARECAEARGKDVGVIATENGWNLYVGGNGGLTPKHAVLLAGEL HHCCCCCCEEEEEHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCEEEEECCC DDETLIRYIDRYLMFYIRTADRLQRTAPWQEALEGGIDYLKQVICEDSLGIADELEAAMA CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH RHVEGYKDEWAAVLEDEEKLARFVSFVNAPEEADPTIAFDDSGERKVPVLLGMPEVAPRV HHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEECCCHHCCHH ESVTAAQAK HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8468296 [H]