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The map label for this gene is nirD [H]

Identifier: 54026533

GI number: 54026533

Start: 4740305

End: 4740700

Strand: Reverse

Name: nirD [H]

Synonym: nfa45600

Alternate gene names: 54026533

Gene position: 4740700-4740305 (Counterclockwise)

Preceding gene: 54026534

Following gene: 54026532

Centisome position: 78.73

GC content: 69.44

Gene sequence:

>396_bases
ATGACCGTAATCGACACACCCAGCATCTCGCCCGCCACGGCCACCGGTTGGACGCAAGCCTGCCGACTCGATTTCCTGAT
CCCCGGCCGCGGTGTCGCGGTGCTGCTGCGGGGCGGACGGCAGGCCGCGCTGTTCCTGCTGCCCGACGGCACGCTCTACG
CCGTCGGCAACATCGATCCGTTCGGCCGCGCGGCGGTGATGTCGCGCGGGATCGTCGGCGATCGCGGCGGTGTGCCCGTC
GTCGCCTCGCCACTGCTCAAGCAGGCGTTCTCGTTGCTCGACGGGCACTGCCTGGACGACGAATCGGCGGCGCTGCCGGT
GTATGCGGTGCGCGTCGACGACGGCATCGTCTCGGTATCCAACGAGCCGGTCGCGCTCGAATCCTCGGACGGATGA

Upstream 100 bases:

>100_bases
CGCGTGGAATCCGTCACAGCCGCGCAGGCGAAATAACGGCTTAACGACGCGGAAACAGGACGCCGGTACCAATGAACCAG
GCGTTCGGAGGAGGAACCCG

Downstream 100 bases:

>100_bases
ACCACCTATGAGCACTATCGACGCGGGCGCCCCCCTCGCCGGATTCACCGTCGGCATCACGGCGGCGCGGCGCGCCGAGG
AATTCGCCACCCTGTTGACC

Product: putative nitrite reductase (NAD(P)H) subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MTVIDTPSISPATATGWTQACRLDFLIPGRGVAVLLRGGRQAALFLLPDGTLYAVGNIDPFGRAAVMSRGIVGDRGGVPV
VASPLLKQAFSLLDGHCLDDESAALPVYAVRVDDGIVSVSNEPVALESSDG

Sequences:

>Translated_131_residues
MTVIDTPSISPATATGWTQACRLDFLIPGRGVAVLLRGGRQAALFLLPDGTLYAVGNIDPFGRAAVMSRGIVGDRGGVPV
VASPLLKQAFSLLDGHCLDDESAALPVYAVRVDDGIVSVSNEPVALESSDG
>Mature_130_residues
TVIDTPSISPATATGWTQACRLDFLIPGRGVAVLLRGGRQAALFLLPDGTLYAVGNIDPFGRAAVMSRGIVGDRGGVPVV
ASPLLKQAFSLLDGHCLDDESAALPVYAVRVDDGIVSVSNEPVALESSDG

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=106, Percent_Identity=40.5660377358491, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 13506; Mature: 13374

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVIDTPSISPATATGWTQACRLDFLIPGRGVAVLLRGGRQAALFLLPDGTLYAVGNIDP
CEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCCEEEECCCCC
FGRAAVMSRGIVGDRGGVPVVASPLLKQAFSLLDGHCLDDESAALPVYAVRVDDGIVSVS
CCHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEC
NEPVALESSDG
CCCEEEECCCC
>Mature Secondary Structure 
TVIDTPSISPATATGWTQACRLDFLIPGRGVAVLLRGGRQAALFLLPDGTLYAVGNIDP
EEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCCEEEECCCCC
FGRAAVMSRGIVGDRGGVPVVASPLLKQAFSLLDGHCLDDESAALPVYAVRVDDGIVSVS
CCHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEC
NEPVALESSDG
CCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]