| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is sglT [H]
Identifier: 54026477
GI number: 54026477
Start: 4668612
End: 4670369
Strand: Reverse
Name: sglT [H]
Synonym: nfa45040
Alternate gene names: 54026477
Gene position: 4670369-4668612 (Counterclockwise)
Preceding gene: 54026478
Following gene: 54026476
Centisome position: 77.57
GC content: 66.1
Gene sequence:
>1758_bases GTGCCGCTTGCCGATTCCCTGTTCCTGACCTCCGCCGCACCCGGATCGCCCGCCGCCGCGGTGCGTTTCGAGGCGGTCGA GACGCTGCGCCTGGACGCCGATCCGGTCGACTACGCGCTGGTCGCGTTGTATTTCGTGTTCGTGCTCGGTATCGGATTGC TGGCGCGCAGCCGGGTCTCCTCCAGCATCGACTTCTTCCTGTCCGGCCGGTCGCTGCCAGCCTGGGTGACCGGCCTGGCC TTCATCTCGGCCAACCTCGGCGCGGTCGAGATCATGGGCATGTCGGCCAACGGCGCCGAATACGGATTCCCCACCTTCCA CTATTTCTGGATCGGCGCGATTCCGGCCATGCTGTTCCTCGGCGTGGTGATGATGCCGTTCTATTACGGCTCCAAGGTGC GCAGCGTGCCGGAGTTCATGCGCAGGCGCTTCGGCACCGGCGCGCACCTGGTGAACGCGCTCAGCTTCGCCACCGCGCAG ATCCTCATCGCCGGGGTCAACCTGTACCTGCTCGGCTCGATCCTCAATGTGCTGCTCGGCTGGCCGCTGTGGGTCTCGGT GGTCGCCGCCGCGGCGATCGTGCTGTCCTACATCACCCTCGGCGGGCTCTCGGCCGCCATCTACAACGAAGTTCTGCAGT TCTTCGTCATCGTCGCGGCACTGCTGCCGTTGACCCTCGTCGGCCTGCACCGGGTGGGCGGCTGGGACGGGCTGACCGAA CGGGTCACCGCCTCGCCGGGTGGCGCCGCCCAGCTGGATTCGTGGCCGGGCAACGCGCTCAGCGGGTTCACCGACAACTT CCTGTCGGTGCTCGGCATCGTCTTCGGTCTCGGCTTCGTGCTGTCCTTCGGTTACTGGACCACCAACTTCGTCGAGGTCC AGCGCGCGATGGCGACCAACTCGATCTCCGCGGCCCGGCGCACGCCCATCATCGGCGCCTACCCGAAGATGTTCATCCCG CTCATCGTGGTCATCCCCGGCATGATCAGCGCTGTGCTCGTGCCGGAGATGATCGAGTACAAGCAGGCCAAGGCGGCCGA TCCGGATTTCAGCGGCGATGTCACCTACAACCAGGCCCTGCTGTACCTGATGAAGGAGGTCCTGCCGAACGGTCTGCTCG GGGTGGGCCTGGCCGGTCTGCTCGCGGCGTTCATGGCGGGCATGGCCGCCAACGTCTCGGCCTTCAACACCGTGTTCAGC TTCGACCTCTGGCAGCAGTACGTGGTGAAGGACCGGCCCGACGGCTATTACCTCACCGTCGGCAGGCTGGCCACGGTCGG GGCGACGGTCGCGGCCATCTTCACCGCGTTCATCGCGGGCAATTTCAGCAACATGATGGACTACCTGCAGACGCTGTTCA GCTTCTTCAACGCGCCGCTGTTCGCGACGTTCATCCTCGGCATGTTCTGGAAGCGGATGACCCCGACCGCGGGCTGGGCG GGCCTGGTGGCCGGAACCGGTTCGGCCATCGTCATCTTCCTGCTGCACGAGATGGAGGTCTTCCAACTGTCCGGCCAGGG TGCCAGTTTCGTCGCCGCCGGCGTTGCCTTCGTGGTCGACATCCTGGTCAGCGTCGCGGTGACGATGGTGACCCAGCCCA AGCCGGCCGCCGAACTGGTGGGGCTGGTGTACTCCGAGACACCCGCACAGCTGCGCACCGACCCCGAGGCGGCCACGCTG CCCTGGTATCAGCGCCCCGTGCTGCTCGCGGGCATCGCCCTGGTGCTGGTCATTCTGCTCAACATCTTCGTGGGATAG
Upstream 100 bases:
>100_bases GGACGCCGCAGGTCGGTGCGGGGTCGCTGTCGCCGCACGAAGCCGCTCGCCGCGCGCGACCCGCTCGTCGAGTGGTGCCA CCGCAAGGAGGGACACCGCT
Downstream 100 bases:
>100_bases GGAGATCCGATGCTGTTCGACATCCGCACCATCGTGGCCGCGCTGCTCGGCAGTTACGGGATCATCCTGGTGATCACCGG GCTGGTCCACGACACCGCCG
Product: putative transporter
Products: NA
Alternate protein names: Na(+)/glucose symporter [H]
Number of amino acids: Translated: 585; Mature: 584
Protein sequence:
>585_residues MPLADSLFLTSAAPGSPAAAVRFEAVETLRLDADPVDYALVALYFVFVLGIGLLARSRVSSSIDFFLSGRSLPAWVTGLA FISANLGAVEIMGMSANGAEYGFPTFHYFWIGAIPAMLFLGVVMMPFYYGSKVRSVPEFMRRRFGTGAHLVNALSFATAQ ILIAGVNLYLLGSILNVLLGWPLWVSVVAAAAIVLSYITLGGLSAAIYNEVLQFFVIVAALLPLTLVGLHRVGGWDGLTE RVTASPGGAAQLDSWPGNALSGFTDNFLSVLGIVFGLGFVLSFGYWTTNFVEVQRAMATNSISAARRTPIIGAYPKMFIP LIVVIPGMISAVLVPEMIEYKQAKAADPDFSGDVTYNQALLYLMKEVLPNGLLGVGLAGLLAAFMAGMAANVSAFNTVFS FDLWQQYVVKDRPDGYYLTVGRLATVGATVAAIFTAFIAGNFSNMMDYLQTLFSFFNAPLFATFILGMFWKRMTPTAGWA GLVAGTGSAIVIFLLHEMEVFQLSGQGASFVAAGVAFVVDILVSVAVTMVTQPKPAAELVGLVYSETPAQLRTDPEAATL PWYQRPVLLAGIALVLVILLNIFVG
Sequences:
>Translated_585_residues MPLADSLFLTSAAPGSPAAAVRFEAVETLRLDADPVDYALVALYFVFVLGIGLLARSRVSSSIDFFLSGRSLPAWVTGLA FISANLGAVEIMGMSANGAEYGFPTFHYFWIGAIPAMLFLGVVMMPFYYGSKVRSVPEFMRRRFGTGAHLVNALSFATAQ ILIAGVNLYLLGSILNVLLGWPLWVSVVAAAAIVLSYITLGGLSAAIYNEVLQFFVIVAALLPLTLVGLHRVGGWDGLTE RVTASPGGAAQLDSWPGNALSGFTDNFLSVLGIVFGLGFVLSFGYWTTNFVEVQRAMATNSISAARRTPIIGAYPKMFIP LIVVIPGMISAVLVPEMIEYKQAKAADPDFSGDVTYNQALLYLMKEVLPNGLLGVGLAGLLAAFMAGMAANVSAFNTVFS FDLWQQYVVKDRPDGYYLTVGRLATVGATVAAIFTAFIAGNFSNMMDYLQTLFSFFNAPLFATFILGMFWKRMTPTAGWA GLVAGTGSAIVIFLLHEMEVFQLSGQGASFVAAGVAFVVDILVSVAVTMVTQPKPAAELVGLVYSETPAQLRTDPEAATL PWYQRPVLLAGIALVLVILLNIFVG >Mature_584_residues PLADSLFLTSAAPGSPAAAVRFEAVETLRLDADPVDYALVALYFVFVLGIGLLARSRVSSSIDFFLSGRSLPAWVTGLAF ISANLGAVEIMGMSANGAEYGFPTFHYFWIGAIPAMLFLGVVMMPFYYGSKVRSVPEFMRRRFGTGAHLVNALSFATAQI LIAGVNLYLLGSILNVLLGWPLWVSVVAAAAIVLSYITLGGLSAAIYNEVLQFFVIVAALLPLTLVGLHRVGGWDGLTER VTASPGGAAQLDSWPGNALSGFTDNFLSVLGIVFGLGFVLSFGYWTTNFVEVQRAMATNSISAARRTPIIGAYPKMFIPL IVVIPGMISAVLVPEMIEYKQAKAADPDFSGDVTYNQALLYLMKEVLPNGLLGVGLAGLLAAFMAGMAANVSAFNTVFSF DLWQQYVVKDRPDGYYLTVGRLATVGATVAAIFTAFIAGNFSNMMDYLQTLFSFFNAPLFATFILGMFWKRMTPTAGWAG LVAGTGSAIVIFLLHEMEVFQLSGQGASFVAAGVAFVVDILVSVAVTMVTQPKPAAELVGLVYSETPAQLRTDPEAATLP WYQRPVLLAGIALVLVILLNIFVG
Specific function: Actively transports glucose into cells by Na(+) cotransport [H]
COG id: COG4146
COG function: function code R; Predicted symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI17941285, Length=461, Percent_Identity=28.8503253796095, Blast_Score=176, Evalue=4e-44, Organism=Homo sapiens, GI14140236, Length=557, Percent_Identity=25.3141831238779, Blast_Score=175, Evalue=1e-43, Organism=Homo sapiens, GI4507031, Length=579, Percent_Identity=26.5975820379965, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI4507033, Length=561, Percent_Identity=28.1639928698752, Blast_Score=165, Evalue=1e-40, Organism=Homo sapiens, GI206597483, Length=600, Percent_Identity=27.3333333333333, Blast_Score=159, Evalue=6e-39, Organism=Homo sapiens, GI110835708, Length=552, Percent_Identity=27.7173913043478, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI206597487, Length=624, Percent_Identity=26.2820512820513, Blast_Score=154, Evalue=3e-37, Organism=Homo sapiens, GI109659836, Length=472, Percent_Identity=27.7542372881356, Blast_Score=150, Evalue=4e-36, Organism=Homo sapiens, GI109659839, Length=483, Percent_Identity=26.9151138716356, Blast_Score=149, Evalue=6e-36, Organism=Homo sapiens, GI4507035, Length=460, Percent_Identity=25.2173913043478, Blast_Score=94, Evalue=5e-19, Organism=Homo sapiens, GI157671931, Length=469, Percent_Identity=22.6012793176972, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI256985183, Length=435, Percent_Identity=24.5977011494253, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI167466278, Length=470, Percent_Identity=24.468085106383, Blast_Score=83, Evalue=8e-16, Organism=Escherichia coli, GI1790113, Length=459, Percent_Identity=23.9651416122004, Blast_Score=100, Evalue=2e-22, Organism=Caenorhabditis elegans, GI32566512, Length=389, Percent_Identity=23.1362467866324, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641117, Length=464, Percent_Identity=23.0603448275862, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI28573698, Length=459, Percent_Identity=20.9150326797386, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI24651739, Length=448, Percent_Identity=20.9821428571429, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI24651741, Length=475, Percent_Identity=18.7368421052632, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI281362054, Length=403, Percent_Identity=24.8138957816377, Blast_Score=76, Evalue=7e-14, Organism=Drosophila melanogaster, GI281362052, Length=403, Percent_Identity=24.8138957816377, Blast_Score=76, Evalue=7e-14, Organism=Drosophila melanogaster, GI281362050, Length=403, Percent_Identity=24.8138957816377, Blast_Score=76, Evalue=7e-14, Organism=Drosophila melanogaster, GI24648056, Length=403, Percent_Identity=24.8138957816377, Blast_Score=76, Evalue=7e-14, Organism=Drosophila melanogaster, GI21356827, Length=403, Percent_Identity=24.8138957816377, Blast_Score=76, Evalue=7e-14, Organism=Drosophila melanogaster, GI24645928, Length=463, Percent_Identity=22.6781857451404, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24650192, Length=361, Percent_Identity=22.9916897506925, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI281362918, Length=459, Percent_Identity=19.8257080610022, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001734 - InterPro: IPR018212 - InterPro: IPR019900 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 62475; Mature: 62344
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLADSLFLTSAAPGSPAAAVRFEAVETLRLDADPVDYALVALYFVFVLGIGLLARSRVS CCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SSIDFFLSGRSLPAWVTGLAFISANLGAVEIMGMSANGAEYGFPTFHYFWIGAIPAMLFL CCHHHEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH GVVMMPFYYGSKVRSVPEFMRRRFGTGAHLVNALSFATAQILIAGVNLYLLGSILNVLLG HHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WPLWVSVVAAAAIVLSYITLGGLSAAIYNEVLQFFVIVAALLPLTLVGLHRVGGWDGLTE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH RVTASPGGAAQLDSWPGNALSGFTDNFLSVLGIVFGLGFVLSFGYWTTNFVEVQRAMATN HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH SISAARRTPIIGAYPKMFIPLIVVIPGMISAVLVPEMIEYKQAKAADPDFSGDVTYNQAL HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LYLMKEVLPNGLLGVGLAGLLAAFMAGMAANVSAFNTVFSFDLWQQYVVKDRPDGYYLTV HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEH GRLATVGATVAAIFTAFIAGNFSNMMDYLQTLFSFFNAPLFATFILGMFWKRMTPTAGWA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCH GLVAGTGSAIVIFLLHEMEVFQLSGQGASFVAAGVAFVVDILVSVAVTMVTQPKPAAELV HHHHCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH GLVYSETPAQLRTDPEAATLPWYQRPVLLAGIALVLVILLNIFVG HHHHCCCCHHHCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PLADSLFLTSAAPGSPAAAVRFEAVETLRLDADPVDYALVALYFVFVLGIGLLARSRVS CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SSIDFFLSGRSLPAWVTGLAFISANLGAVEIMGMSANGAEYGFPTFHYFWIGAIPAMLFL CCHHHEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH GVVMMPFYYGSKVRSVPEFMRRRFGTGAHLVNALSFATAQILIAGVNLYLLGSILNVLLG HHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WPLWVSVVAAAAIVLSYITLGGLSAAIYNEVLQFFVIVAALLPLTLVGLHRVGGWDGLTE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH RVTASPGGAAQLDSWPGNALSGFTDNFLSVLGIVFGLGFVLSFGYWTTNFVEVQRAMATN HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH SISAARRTPIIGAYPKMFIPLIVVIPGMISAVLVPEMIEYKQAKAADPDFSGDVTYNQAL HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LYLMKEVLPNGLLGVGLAGLLAAFMAGMAANVSAFNTVFSFDLWQQYVVKDRPDGYYLTV HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEH GRLATVGATVAAIFTAFIAGNFSNMMDYLQTLFSFFNAPLFATFILGMFWKRMTPTAGWA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCH GLVAGTGSAIVIFLLHEMEVFQLSGQGASFVAAGVAFVVDILVSVAVTMVTQPKPAAELV HHHHCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH GLVYSETPAQLRTDPEAATLPWYQRPVLLAGIALVLVILLNIFVG HHHHCCCCHHHCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8652595; 10835424; 10757971 [H]