Click here to switch to the map view.

The map label for this gene is 54026462

Identifier: 54026462

GI number: 54026462

Start: 4652398

End: 4653255

Strand: Reverse

Name: 54026462

Synonym: nfa44890

Alternate gene names: NA

Gene position: 4653255-4652398 (Counterclockwise)

Preceding gene: 54026467

Following gene: 54026461

Centisome position: 77.28

GC content: 75.29

Gene sequence:

>858_bases
GTGAGCGACAACGAGTTGGGTCTGTTCCTGCGGTCCCGGCGCGAAGCCGTCGAGCCCGCCCGGGTCGGCCTGCCCGCGGG
CCCGCGGCGCCGCACCCCCGGCCTGCGGCGTGCCGAACTGGCGACGCTGGCCGGGGTGAGCGTGGAATACCTCACCCGGC
TCGAACAGGGCCGCGACCGCAGGCCCTCGCCCGCGGTGCTGTCGGCGCTGTCGGACGCCCTGCGGCTGACCCCGAACGAG
CGGGTGCACCTGTATCGCCTCACGAAGGCGAGCGACCCGGGCTTCACCTGCACGGGGCAGCAGCCGGCCGCCCGCGAGGT
GCGTCCCACCGTGCGCGCCCTGCTCGACCACCTCGATCCGGCCGCCGCGGCGCTGTTCGACCAGACCGGCGTCGTGGTCG
CCGCCACCACGGCCTACCGCAGGCTGATGGCGCCGACCGGGCTGTTCGACGCCGACAACGACGGCCACCTCGCCTGGTAC
GTCTTCGCCGATCCGCGAGCCCGCGAGCTCTACCCCGACTGGTCGCACGTCGCCGATCAGTGGGTCGCCACCCTCAAGCA
GGGGCCGTTCCGCGCCGATCCGGCCCTGGCCGCGCTGGCCGACCAGCTCACCGTGGTGGCGGGCGCGGAGTTCACCGACC
GGGTGGCGTCGGTGCCCGGCCTGCCCGCCGCGACCGGCGTGATGCGGATGAACCATCCCGAGGTCGGCGCGTTGCGGCTG
GCCTACGAGACACTCGACCTCTCCGCCGACGACGCGCAACGGCTGGTCGTGCACCTGCCCGCGGACGAGGCCACCGCCGC
GGCCATGGACACCCTGGCCGGGCGGCGTCCCGGTGGCCTGCGCGCGGTCTCCGGGTGA

Upstream 100 bases:

>100_bases
TGTCGAGACTGCCGACGGCGGCGCCGACCAGGGAGACCGCGGTCAGGGTGGTAGTACGAGGGCCACCCTTCCGGCGCCGC
GCGCTTGTACCGTTCCAGGG

Downstream 100 bases:

>100_bases
GCGGTTTCACCGGCTCGCGGGGGACCGGTAGCCTTGGAGATCGTGCATCCTGACGTTTCCGCTGATCTCGCCGAACTCGA
CGCCACCCTCAAGACGGTCG

Product: putative DNA-binding protein

Products: NA

Alternate protein names: Helix-Turn-Helix Domain Protein; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family; Helix-Turn-Helix Protein; Helix-Turn-Helix Domain Containing Protein; Transcriptional Regulator Protein

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSDNELGLFLRSRREAVEPARVGLPAGPRRRTPGLRRAELATLAGVSVEYLTRLEQGRDRRPSPAVLSALSDALRLTPNE
RVHLYRLTKASDPGFTCTGQQPAAREVRPTVRALLDHLDPAAAALFDQTGVVVAATTAYRRLMAPTGLFDADNDGHLAWY
VFADPRARELYPDWSHVADQWVATLKQGPFRADPALAALADQLTVVAGAEFTDRVASVPGLPAATGVMRMNHPEVGALRL
AYETLDLSADDAQRLVVHLPADEATAAAMDTLAGRRPGGLRAVSG

Sequences:

>Translated_285_residues
MSDNELGLFLRSRREAVEPARVGLPAGPRRRTPGLRRAELATLAGVSVEYLTRLEQGRDRRPSPAVLSALSDALRLTPNE
RVHLYRLTKASDPGFTCTGQQPAAREVRPTVRALLDHLDPAAAALFDQTGVVVAATTAYRRLMAPTGLFDADNDGHLAWY
VFADPRARELYPDWSHVADQWVATLKQGPFRADPALAALADQLTVVAGAEFTDRVASVPGLPAATGVMRMNHPEVGALRL
AYETLDLSADDAQRLVVHLPADEATAAAMDTLAGRRPGGLRAVSG
>Mature_284_residues
SDNELGLFLRSRREAVEPARVGLPAGPRRRTPGLRRAELATLAGVSVEYLTRLEQGRDRRPSPAVLSALSDALRLTPNER
VHLYRLTKASDPGFTCTGQQPAAREVRPTVRALLDHLDPAAAALFDQTGVVVAATTAYRRLMAPTGLFDADNDGHLAWYV
FADPRARELYPDWSHVADQWVATLKQGPFRADPALAALADQLTVVAGAEFTDRVASVPGLPAATGVMRMNHPEVGALRLA
YETLDLSADDAQRLVVHLPADEATAAAMDTLAGRRPGGLRAVSG

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30668; Mature: 30537

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNELGLFLRSRREAVEPARVGLPAGPRRRTPGLRRAELATLAGVSVEYLTRLEQGRDR
CCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCC
RPSPAVLSALSDALRLTPNERVHLYRLTKASDPGFTCTGQQPAAREVRPTVRALLDHLDP
CCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHCCH
AAAALFDQTGVVVAATTAYRRLMAPTGLFDADNDGHLAWYVFADPRARELYPDWSHVADQ
HHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
WVATLKQGPFRADPALAALADQLTVVAGAEFTDRVASVPGLPAATGVMRMNHPEVGALRL
HHHHHHCCCCCCCHHHHHHHHHHHEEECCHHHHHHHCCCCCCHHHCEEECCCCCCCCEEE
AYETLDLSADDAQRLVVHLPADEATAAAMDTLAGRRPGGLRAVSG
EHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SDNELGLFLRSRREAVEPARVGLPAGPRRRTPGLRRAELATLAGVSVEYLTRLEQGRDR
CCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCC
RPSPAVLSALSDALRLTPNERVHLYRLTKASDPGFTCTGQQPAAREVRPTVRALLDHLDP
CCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHCCH
AAAALFDQTGVVVAATTAYRRLMAPTGLFDADNDGHLAWYVFADPRARELYPDWSHVADQ
HHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
WVATLKQGPFRADPALAALADQLTVVAGAEFTDRVASVPGLPAATGVMRMNHPEVGALRL
HHHHHHCCCCCCCHHHHHHHHHHHEEECCHHHHHHHCCCCCCHHHCEEECCCCCCCCEEE
AYETLDLSADDAQRLVVHLPADEATAAAMDTLAGRRPGGLRAVSG
EHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA