| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
Click here to switch to the map view.
The map label for this gene is 54026467
Identifier: 54026467
GI number: 54026467
Start: 4658136
End: 4659077
Strand: Reverse
Name: 54026467
Synonym: nfa44940
Alternate gene names: NA
Gene position: 4659077-4658136 (Counterclockwise)
Preceding gene: 54026476
Following gene: 54026462
Centisome position: 77.38
GC content: 73.14
Gene sequence:
>942_bases GTGCGCATCGGCGCCGACCTGCTCGGCGCGGCCGCGACACTGGCGGGCGTCGCGGGCATCGCGCTGCACTTCGGCCGGTG GTCGGCCCAGCTGCCGGTGCTCGCGGCCTCGGCCGCGCCGTATCTGATGGGGTCGGCGGTGATCGGCGCCGTGGCGTTCC TGTCCGTGCGGCGCTGGAGCGGTGCGGCGGTGGCCACGGTCGTCCTGATCGCGGGGGTGGCCGTGCAGGCGCCGCTGTAC TTCTCGGACCCCGGCTCCGCCGACGGCCCCGTGGTGCGGATGATGCAGGCCAACCTGCTGTTCGACGGCACCGACCCGCG GACATTCGTCGAGCAGGTGCGCGCGCACGACATCGACGTGCTCACCGTCAACGAACTCACCCCGGCCGCCGTGGCGGGAC TCGCGGCCGCGGGAATCGACGAGCTGCTCCCGCACCGGTACCTCGCCCCCGGCCGAACCGCGAGCGGCACCGGGATCTGG AGCCGCCACCCGCTGTCCGACACCGTCGAATACGACGGCTACGTGCTGAACCAACTGTCGGCGACGGCGCAGATCCCCGG CGCGGGCCCGGTCTCGGTCTACGCGATCCACCCCGTGCCGCCGATCTACGACACCGGAGTCTGGGCCGACGAATTGGCCC GCCTGCGCACGATCGTCGAGAACGCGCCCGCGGACCGCCCCGCCCTGGTCGGCGGCGACTTCAACGCCACCCACGACCAC CGGCAATTCCGCGACTACCTGACCGGCCGCTTCGCTGACGCCGCCGACCAAGCGGGCGCCGGACACCTGGCCACCTACCC GACCGACAAATGGTGGCCCGCCGTCGTCGGCATCGACCACATCCTCGTCGCGGGCGGCAGGGCGACGACCGTCGAAGCCC TCGACCTACCCGGCTCCGACCACCGCGCCCTCGTCGCCGAGATCCGCCTCGACCCACACTGA
Upstream 100 bases:
>100_bases CGGCCACGCGTCGACATCCCGGAGTCGCGCTGTGCCCGTACGCGGCGGCGCAGGCGGATCGGCACGATGTGCTTGTCTGT CCGGTGTGATCTCCAGAATT
Downstream 100 bases:
>100_bases GGCGGAAACGACGAACCGGTGCGAGCCCACCCGACCCGCACCGGTCCGTTGCCGTGCTGACTACTTCAGCCCGGCCTACT TCAGTTCGGCGCTGGTCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Integral Membrane Protein; Phosphatase; Endonuclease/Exonuclease/Phosphatase Family Protein; Metal-Dependent Hydrolase-Like Protein; Transmembrane Protein; Endonuclease/Exonuclease/Phosphatase Family; Endonuclease/CDSuclease/Phosphatase; Extracellular Nuclease
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MRIGADLLGAAATLAGVAGIALHFGRWSAQLPVLAASAAPYLMGSAVIGAVAFLSVRRWSGAAVATVVLIAGVAVQAPLY FSDPGSADGPVVRMMQANLLFDGTDPRTFVEQVRAHDIDVLTVNELTPAAVAGLAAAGIDELLPHRYLAPGRTASGTGIW SRHPLSDTVEYDGYVLNQLSATAQIPGAGPVSVYAIHPVPPIYDTGVWADELARLRTIVENAPADRPALVGGDFNATHDH RQFRDYLTGRFADAADQAGAGHLATYPTDKWWPAVVGIDHILVAGGRATTVEALDLPGSDHRALVAEIRLDPH
Sequences:
>Translated_313_residues MRIGADLLGAAATLAGVAGIALHFGRWSAQLPVLAASAAPYLMGSAVIGAVAFLSVRRWSGAAVATVVLIAGVAVQAPLY FSDPGSADGPVVRMMQANLLFDGTDPRTFVEQVRAHDIDVLTVNELTPAAVAGLAAAGIDELLPHRYLAPGRTASGTGIW SRHPLSDTVEYDGYVLNQLSATAQIPGAGPVSVYAIHPVPPIYDTGVWADELARLRTIVENAPADRPALVGGDFNATHDH RQFRDYLTGRFADAADQAGAGHLATYPTDKWWPAVVGIDHILVAGGRATTVEALDLPGSDHRALVAEIRLDPH >Mature_313_residues MRIGADLLGAAATLAGVAGIALHFGRWSAQLPVLAASAAPYLMGSAVIGAVAFLSVRRWSGAAVATVVLIAGVAVQAPLY FSDPGSADGPVVRMMQANLLFDGTDPRTFVEQVRAHDIDVLTVNELTPAAVAGLAAAGIDELLPHRYLAPGRTASGTGIW SRHPLSDTVEYDGYVLNQLSATAQIPGAGPVSVYAIHPVPPIYDTGVWADELARLRTIVENAPADRPALVGGDFNATHDH RQFRDYLTGRFADAADQAGAGHLATYPTDKWWPAVVGIDHILVAGGRATTVEALDLPGSDHRALVAEIRLDPH
Specific function: Unknown
COG id: COG3021
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32793; Mature: 32793
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIGADLLGAAATLAGVAGIALHFGRWSAQLPVLAASAAPYLMGSAVIGAVAFLSVRRWS CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCC GAAVATVVLIAGVAVQAPLYFSDPGSADGPVVRMMQANLLFDGTDPRTFVEQVRAHDIDV CHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCEE LTVNELTPAAVAGLAAAGIDELLPHRYLAPGRTASGTGIWSRHPLSDTVEYDGYVLNQLS EEECCCCHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHH ATAQIPGAGPVSVYAIHPVPPIYDTGVWADELARLRTIVENAPADRPALVGGDFNATHDH HHEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHH RQFRDYLTGRFADAADQAGAGHLATYPTDKWWPAVVGIDHILVAGGRATTVEALDLPGSD HHHHHHHHCCCCCHHHHCCCCCEEECCCCCCCHHHHCCCEEEEECCCCEEEEEEECCCCC HRALVAEIRLDPH CCEEEEEEEECCC >Mature Secondary Structure MRIGADLLGAAATLAGVAGIALHFGRWSAQLPVLAASAAPYLMGSAVIGAVAFLSVRRWS CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCC GAAVATVVLIAGVAVQAPLYFSDPGSADGPVVRMMQANLLFDGTDPRTFVEQVRAHDIDV CHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCEE LTVNELTPAAVAGLAAAGIDELLPHRYLAPGRTASGTGIWSRHPLSDTVEYDGYVLNQLS EEECCCCHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHH ATAQIPGAGPVSVYAIHPVPPIYDTGVWADELARLRTIVENAPADRPALVGGDFNATHDH HHEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHH RQFRDYLTGRFADAADQAGAGHLATYPTDKWWPAVVGIDHILVAGGRATTVEALDLPGSD HHHHHHHHCCCCCHHHHCCCCCEEECCCCCCCHHHHCCCEEEEECCCCEEEEEEECCCCC HRALVAEIRLDPH CCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA