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The map label for this gene is 54026435

Identifier: 54026435

GI number: 54026435

Start: 4629360

End: 4630097

Strand: Reverse

Name: 54026435

Synonym: nfa44620

Alternate gene names: NA

Gene position: 4630097-4629360 (Counterclockwise)

Preceding gene: 54026438

Following gene: 54026431

Centisome position: 76.9

GC content: 77.91

Gene sequence:

>738_bases
GTGGCCGACACCGCGGGTGCGTATCGCGAGCGACCGTCCCGGCTGGACGGGGCGGTGCTGTGGACGCGCACGGTCCGGCC
GGGGGAGTCCGTGCCCGTGCTGCCCGACGGCTGCATCGACCTGCTGTGGCGGGAGGGGACGGTGATGGTCGCCGGTCCCG
ACACCGGGCCGCACCACTCCGACAGCCCGCCCGGCACCCGGTTCGCCGGACTGCGCTTCTTCCCCGGCAGTGCGCCCGCG
CTGCTCGGCGTGCCCGCCGACGAACTCCGGGACCGCCGTGTCGACCTCGTCGACCTGTGGCCCGCCGCCCGGGTGCGCGC
CCTGGCGGCCACCGTGCACGCGGCCCCCGACCCGGCCGACGGCCTCGAAGCGCTCGCCCTGCGGCTGGCCGCCGACAGCG
CCCCGCCCGATCCGCTGTTGCGCGCCGTCGTCGCCGCGCTCGCGGCGGGGGCCACGGTGGCCGAGACCGCCGACACGGTC
GGCCTCGGCGCCCGCGCGCTGCACCGCCGCAGCCTGTCCGCCTTCGGCTACGGGCCCAAGACCCTCGCCCGCATCCTCCG
CATGCACCGCGCACTGGCGGCGGCGCGCCGCGGAATGTCCTTGGCGCAGGCGGCCTTCCACGCGGGCTACGCCGACCAGG
CGCACTTCTCCCGCGAGGTCACCCAACTGGCCGGCGTGCCGCCCGCCCTCCTGATCGGCGATCGGTCGGCCGACCGCGCT
CAGGGGAGTGGCGCGTAG

Upstream 100 bases:

>100_bases
AAGCCGGTCCCGCTCACGGTGCGGGCGGGCGACCTCAGATTAGGGAACCGGTCGCCCGGTCGGCAATCGCGGCGCGGTCG
CCGCCGCTAGGCTCGGTCTC

Downstream 100 bases:

>100_bases
AGGTCCACCCCGTTCCCGTCGGGATCGTTCACCACCGCGTAGCGCTGCCCCCACACCGCGTCCCACGGCTTCAGCTCGCC
CTCGTAGCCGGCCGCGGTCA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MADTAGAYRERPSRLDGAVLWTRTVRPGESVPVLPDGCIDLLWREGTVMVAGPDTGPHHSDSPPGTRFAGLRFFPGSAPA
LLGVPADELRDRRVDLVDLWPAARVRALAATVHAAPDPADGLEALALRLAADSAPPDPLLRAVVAALAAGATVAETADTV
GLGARALHRRSLSAFGYGPKTLARILRMHRALAAARRGMSLAQAAFHAGYADQAHFSREVTQLAGVPPALLIGDRSADRA
QGSGA

Sequences:

>Translated_245_residues
MADTAGAYRERPSRLDGAVLWTRTVRPGESVPVLPDGCIDLLWREGTVMVAGPDTGPHHSDSPPGTRFAGLRFFPGSAPA
LLGVPADELRDRRVDLVDLWPAARVRALAATVHAAPDPADGLEALALRLAADSAPPDPLLRAVVAALAAGATVAETADTV
GLGARALHRRSLSAFGYGPKTLARILRMHRALAAARRGMSLAQAAFHAGYADQAHFSREVTQLAGVPPALLIGDRSADRA
QGSGA
>Mature_244_residues
ADTAGAYRERPSRLDGAVLWTRTVRPGESVPVLPDGCIDLLWREGTVMVAGPDTGPHHSDSPPGTRFAGLRFFPGSAPAL
LGVPADELRDRRVDLVDLWPAARVRALAATVHAAPDPADGLEALALRLAADSAPPDPLLRAVVAALAAGATVAETADTVG
LGARALHRRSLSAFGYGPKTLARILRMHRALAAARRGMSLAQAAFHAGYADQAHFSREVTQLAGVPPALLIGDRSADRAQ
GSGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25516; Mature: 25385

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTAGAYRERPSRLDGAVLWTRTVRPGESVPVLPDGCIDLLWREGTVMVAGPDTGPHHS
CCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCC
DSPPGTRFAGLRFFPGSAPALLGVPADELRDRRVDLVDLWPAARVRALAATVHAAPDPAD
CCCCCCEECCEEECCCCCCEEECCCHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCH
GLEALALRLAADSAPPDPLLRAVVAALAAGATVAETADTVGLGARALHRRSLSAFGYGPK
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
TLARILRMHRALAAARRGMSLAQAAFHAGYADQAHFSREVTQLAGVPPALLIGDRSADRA
HHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
QGSGA
CCCCC
>Mature Secondary Structure 
ADTAGAYRERPSRLDGAVLWTRTVRPGESVPVLPDGCIDLLWREGTVMVAGPDTGPHHS
CCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCC
DSPPGTRFAGLRFFPGSAPALLGVPADELRDRRVDLVDLWPAARVRALAATVHAAPDPAD
CCCCCCEECCEEECCCCCCEEECCCHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCH
GLEALALRLAADSAPPDPLLRAVVAALAAGATVAETADTVGLGARALHRRSLSAFGYGPK
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
TLARILRMHRALAAARRGMSLAQAAFHAGYADQAHFSREVTQLAGVPPALLIGDRSADRA
HHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
QGSGA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7517396 [H]