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The map label for this gene is ygcH [C]

Identifier: 54026396

GI number: 54026396

Start: 4585888

End: 4586562

Strand: Reverse

Name: ygcH [C]

Synonym: nfa44230

Alternate gene names: 54026396

Gene position: 4586562-4585888 (Counterclockwise)

Preceding gene: 54026397

Following gene: 54026395

Centisome position: 76.17

GC content: 67.11

Gene sequence:

>675_bases
ATGTTCCTGTCCCGCGTCCCGCTGAACCCTGCCCGGCAGGGAACCAGGAAACTCCTGTCCTCGCCCCAGGCAGCGCATGC
CGCTGTGCTGGCCGCCTTCCCGCCACAGCCCAGCACACCCGGGACCGGCCGGGTGCTGTGGCGGGTCGATCGCCGCGACC
ACGCGGTCGACCTCTACGTCGTGAGCCCGTCCGAGCCCGACTTCACCCATATCGTCGAACAAGCCGGATGGCCCACGACG
ACCGCGTGGACCACTCGCAAATACGGCCCGCTGCTCGACCGGCTCGCGGTGGACCAGCAATGGCATTTCCGACTCACCGC
CAATCCGGTCCGAGCCGCTATGAACCGAGACGCGGAAGCACCGTTGACCCGCGGTAAGCGGAGGGGCCTCACCGTGGCGG
GCCAAATGGGGTGGTTGCAGGACAAATCCGCATCCAGCGGCTTTCGGCTCGGCACGTGTCGAACTCTCGAAGGGGACGTG
CCGGATGCGGTGATCACCGAACGCACCACGGAGCGTTTTCGCCGCGGCTCCGCGACGGTCACCTTGTCGGTCGTCACCTA
CGAAGGCGTGCTCGCGGTGAGCGACCCGGAGAAACTCCGGACCGCATTGGTGAACGGAATCGGACGCGCCAAAGGGTACG
GCTGCGGCCTGCTGACCCTTGCTCCGATCGCATGA

Upstream 100 bases:

>100_bases
GCGAGTACGGCTGGCGCACTGTCGTGGAGGACTACACCACGATGCTGAACGCGGAGGGCCGCATCGGACACGAGCCGCTC
GCGGCCCTGGGAGGTGACTG

Downstream 100 bases:

>100_bases
GTGACCAGCCGAGCGCGCGGCCGAACCGCATCGGTGAACTGGTCAGGGCGCGTGACCGGCTGTCGTTCATCTACCTGGAA
CGCGCAACGGTCCACCGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Cse3 Family Protein; CRISPR-Associated Protein Cse3 Family; Cse3 Family CRISPR-Associated Protein; Transcriptional Regulator; CRISPR-Associated Helicase Cas3 Family Protein; CRISPR-Associated CSE3 Family Protein; CRISPR-Associated Protein Ct; Crispr-Associated Protein; CRISPR-Associated Protein CT; LOW QUALITY PROTEIN CRISPR-Associated Protein

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MFLSRVPLNPARQGTRKLLSSPQAAHAAVLAAFPPQPSTPGTGRVLWRVDRRDHAVDLYVVSPSEPDFTHIVEQAGWPTT
TAWTTRKYGPLLDRLAVDQQWHFRLTANPVRAAMNRDAEAPLTRGKRRGLTVAGQMGWLQDKSASSGFRLGTCRTLEGDV
PDAVITERTTERFRRGSATVTLSVVTYEGVLAVSDPEKLRTALVNGIGRAKGYGCGLLTLAPIA

Sequences:

>Translated_224_residues
MFLSRVPLNPARQGTRKLLSSPQAAHAAVLAAFPPQPSTPGTGRVLWRVDRRDHAVDLYVVSPSEPDFTHIVEQAGWPTT
TAWTTRKYGPLLDRLAVDQQWHFRLTANPVRAAMNRDAEAPLTRGKRRGLTVAGQMGWLQDKSASSGFRLGTCRTLEGDV
PDAVITERTTERFRRGSATVTLSVVTYEGVLAVSDPEKLRTALVNGIGRAKGYGCGLLTLAPIA
>Mature_224_residues
MFLSRVPLNPARQGTRKLLSSPQAAHAAVLAAFPPQPSTPGTGRVLWRVDRRDHAVDLYVVSPSEPDFTHIVEQAGWPTT
TAWTTRKYGPLLDRLAVDQQWHFRLTANPVRAAMNRDAEAPLTRGKRRGLTVAGQMGWLQDKSASSGFRLGTCRTLEGDV
PDAVITERTTERFRRGSATVTLSVVTYEGVLAVSDPEKLRTALVNGIGRAKGYGCGLLTLAPIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789114, Length=229, Percent_Identity=29.6943231441048, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24398; Mature: 24398

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLSRVPLNPARQGTRKLLSSPQAAHAAVLAAFPPQPSTPGTGRVLWRVDRRDHAVDLYV
CCCCCCCCCHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEE
VSPSEPDFTHIVEQAGWPTTTAWTTRKYGPLLDRLAVDQQWHFRLTANPVRAAMNRDAEA
ECCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCC
PLTRGKRRGLTVAGQMGWLQDKSASSGFRLGTCRTLEGDVPDAVITERTTERFRRGSATV
CHHCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEE
TLSVVTYEGVLAVSDPEKLRTALVNGIGRAKGYGCGLLTLAPIA
EEEEEEECCEEEECCHHHHHHHHHHHHCCCCCCCCCEEEECCCC
>Mature Secondary Structure
MFLSRVPLNPARQGTRKLLSSPQAAHAAVLAAFPPQPSTPGTGRVLWRVDRRDHAVDLYV
CCCCCCCCCHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEE
VSPSEPDFTHIVEQAGWPTTTAWTTRKYGPLLDRLAVDQQWHFRLTANPVRAAMNRDAEA
ECCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCC
PLTRGKRRGLTVAGQMGWLQDKSASSGFRLGTCRTLEGDVPDAVITERTTERFRRGSATV
CHHCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEE
TLSVVTYEGVLAVSDPEKLRTALVNGIGRAKGYGCGLLTLAPIA
EEEEEEECCEEEECCHHHHHHHHHHHHCCCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA