| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026261
Identifier: 54026261
GI number: 54026261
Start: 4443988
End: 4444827
Strand: Reverse
Name: 54026261
Synonym: nfa42900
Alternate gene names: NA
Gene position: 4444827-4443988 (Counterclockwise)
Preceding gene: 54026262
Following gene: 54026260
Centisome position: 73.82
GC content: 74.17
Gene sequence:
>840_bases GTGAGTGAGACCAATTCGGCGGGCGCCCCGGCGTCGCAGGCGCCCCAGCCCAAGGACGCCTCGACGGTGATGCTGGTGCG CGACAGCGCCCGCGGACCCGAGGTGTTCCTGCAGCGCCGCGTCGGCGGGATGGCCTTCGCGGCGGGCATGACGGTGTTCC CGGGCGGCGGGGTCGACCCCTCCGACGCCACCGCCGACATCGCCTGGGCCGGCCCCGAACCGGCCTGGTGGGCACGCCGT TTCGACACCACCGAGCCGCGGGTCAAGGCCCTGGTCTGCGCGGCGGTGCGGGAGACGTTCGAGGAATGCGGGGTGCTGCT GGCCGGGCCGACCGCCGACACCGTCGTGGGCGACACCGCCGCCTACCGCGAAGCACGCGGGAAGTTGGAACGGCGCGAAC TCTCGCTGGCCGCCTTCCTCGCCGAGGAGAAGCTCGTCCTGCGCGCGGATCTGCTGCGGCCGTGGGCGAATTGGATCACC CCGGTGATCGAGCCGCGCCGCTACGACACCCGGTTCTTCGTCGCCGTGCTGCCCTCGGGCCAGCGCGCCGACGGCGCCAC CTCCGAGGCCGCCGAGGTGCACTGGCGCACCCCCGCCGAGGAACTGGACCGCTGGCGCGAGGGCGTCGACATCCTGCTGC CGCCCACCTGGGCTCAGCTGGACGCGCTCGCGGCCTTCGGCTCGACCGCCGAGATCCTGGCCGCCGAACCGGTGATCGAG CCGATCATGCCGGTGTTGGCCCCCGCCGACGGCGCGCAGAAGCTGACGTTCCCCGACGGCGCCCGCTACTTCGCCGACCT GCCGGAGGCGGGCAAGCTGCGCGGTTCGGCGCGCAGCTGA
Upstream 100 bases:
>100_bases CCTCGACCGGATCGAAGGCCGCTGGTTCGCGCGGCGGGCGCGCCGGGCGGGCAGGCACCGCTCGCGCTGACGCCACAGTG ACGCGGGCTATGGTGCTGGG
Downstream 100 bases:
>100_bases GCGCCGGGCATCGCGCGGGCGCGGCTGCGCCGGGCGGTAGGTTGCCTGGTATGGCCGAATTCGTGACCCTGGGACAGCCG GACGAGGACGGGGTCGCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: Beta-Lactamase Domain-Containing Protein; NUDIX Family Hydrolase; NUDIX Family Protein; Beta-Lactamase-Like; NUDIX Domain-Containing Protein; Beta-Lactamase Domain Protein; Beta-Lactamase-Like Protein; NTP Pyrophosphohydrolase Including Oxidative Damage Repair; Nudix Hydrolase; NUDIX Protein; Phosphohydrolase; Zinc-Dependent Hydrolase; NUDIX/MutT Family Hydrolase; Hydrolase; NUDIX HydrolaseBeta-Lactamase-Like; Nudix Superfamily Hydrolase; Hydrolase NUDIX Family Domain Protein; Hydrolase NUDIX Family
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSETNSAGAPASQAPQPKDASTVMLVRDSARGPEVFLQRRVGGMAFAAGMTVFPGGGVDPSDATADIAWAGPEPAWWARR FDTTEPRVKALVCAAVRETFEECGVLLAGPTADTVVGDTAAYREARGKLERRELSLAAFLAEEKLVLRADLLRPWANWIT PVIEPRRYDTRFFVAVLPSGQRADGATSEAAEVHWRTPAEELDRWREGVDILLPPTWAQLDALAAFGSTAEILAAEPVIE PIMPVLAPADGAQKLTFPDGARYFADLPEAGKLRGSARS
Sequences:
>Translated_279_residues MSETNSAGAPASQAPQPKDASTVMLVRDSARGPEVFLQRRVGGMAFAAGMTVFPGGGVDPSDATADIAWAGPEPAWWARR FDTTEPRVKALVCAAVRETFEECGVLLAGPTADTVVGDTAAYREARGKLERRELSLAAFLAEEKLVLRADLLRPWANWIT PVIEPRRYDTRFFVAVLPSGQRADGATSEAAEVHWRTPAEELDRWREGVDILLPPTWAQLDALAAFGSTAEILAAEPVIE PIMPVLAPADGAQKLTFPDGARYFADLPEAGKLRGSARS >Mature_278_residues SETNSAGAPASQAPQPKDASTVMLVRDSARGPEVFLQRRVGGMAFAAGMTVFPGGGVDPSDATADIAWAGPEPAWWARRF DTTEPRVKALVCAAVRETFEECGVLLAGPTADTVVGDTAAYREARGKLERRELSLAAFLAEEKLVLRADLLRPWANWITP VIEPRRYDTRFFVAVLPSGQRADGATSEAAEVHWRTPAEELDRWREGVDILLPPTWAQLDALAAFGSTAEILAAEPVIEP IMPVLAPADGAQKLTFPDGARYFADLPEAGKLRGSARS
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30025; Mature: 29894
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETNSAGAPASQAPQPKDASTVMLVRDSARGPEVFLQRRVGGMAFAAGMTVFPGGGVDP CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEECCCEECCCCCCCC SDATADIAWAGPEPAWWARRFDTTEPRVKALVCAAVRETFEECGVLLAGPTADTVVGDTA CCCCEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHCCHH AYREARGKLERRELSLAAFLAEEKLVLRADLLRPWANWITPVIEPRRYDTRFFVAVLPSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC QRADGATSEAAEVHWRTPAEELDRWREGVDILLPPTWAQLDALAAFGSTAEILAAEPVIE CCCCCCCCCHHHEEECCCHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCHHHHHHCHHHH PIMPVLAPADGAQKLTFPDGARYFADLPEAGKLRGSARS HHHHHHCCCCCCCEECCCCCCHHHHCCCCHHCCCCCCCC >Mature Secondary Structure SETNSAGAPASQAPQPKDASTVMLVRDSARGPEVFLQRRVGGMAFAAGMTVFPGGGVDP CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEECCCEECCCCCCCC SDATADIAWAGPEPAWWARRFDTTEPRVKALVCAAVRETFEECGVLLAGPTADTVVGDTA CCCCEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHCCHH AYREARGKLERRELSLAAFLAEEKLVLRADLLRPWANWITPVIEPRRYDTRFFVAVLPSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC QRADGATSEAAEVHWRTPAEELDRWREGVDILLPPTWAQLDALAAFGSTAEILAAEPVIE CCCCCCCCCHHHEEECCCHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCHHHHHHCHHHH PIMPVLAPADGAQKLTFPDGARYFADLPEAGKLRGSARS HHHHHHCCCCCCCEECCCCCCHHHHCCCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA