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The map label for this gene is rbfA

Identifier: 54026035

GI number: 54026035

Start: 4213187

End: 4213630

Strand: Reverse

Name: rbfA

Synonym: nfa40650

Alternate gene names: 54026035

Gene position: 4213630-4213187 (Counterclockwise)

Preceding gene: 54026036

Following gene: 54026034

Centisome position: 69.98

GC content: 69.37

Gene sequence:

>444_bases
GTGGTGGATCAAGCCAGGGCACGCCGACTCGCGAAGCGGATTTCGGAGATCGTGGCCACCGCCATCGAGTACGAAGTGAA
GGATCCGCGGCTGCGTTTCGTGACGATCACCGACGCGAAGGTCACCGGTGATCTGCGCGAGGCGACCGTGTACTACACGG
TCATGGGCGAGACCATCGACGCCGAACCCGATTACGACGCCGCGGCGGCCGGCTTGGCCAAGGCCAAGGGGGTGCTGCGG
TCGAAGGTGGGCGCGGGCACCGGGGTGAAGTTCACCCCGTCGCTGGCGTTCGTGTTGGACAAGGTGCCCGACGCCGCGCG
GGAGATGGAGGAGCTGTTGGCCAGGGCGCGCGCCGCGGACGCCGAGGTGGCGCGCGTGGCCGCGGAGGCCAGGCACGCGG
GCGAGCCGGACCCGTACAAGACCGATCGCGACGACGCAGAGTGA

Upstream 100 bases:

>100_bases
CGTCGCGGCGCGCCCGGAGCTAGAGTTGCTGGCAGTACGCCGCCGCGTCTTCGGACCCGAGGACTAGACGGTTTTTCATC
GATAGTGAGGAGGGACAGCC

Downstream 100 bases:

>100_bases
CGCGCCGCCGATGACGACCAGCGGTCCCGGCGTCGGAGCGGATTCCGCTGCGGCGCAAGCCTCTTCGGACGGTTCGCCGG
ACATGGTCGGCGCGGCGCTG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MVDQARARRLAKRISEIVATAIEYEVKDPRLRFVTITDAKVTGDLREATVYYTVMGETIDAEPDYDAAAAGLAKAKGVLR
SKVGAGTGVKFTPSLAFVLDKVPDAAREMEELLARARAADAEVARVAAEARHAGEPDPYKTDRDDAE

Sequences:

>Translated_147_residues
MVDQARARRLAKRISEIVATAIEYEVKDPRLRFVTITDAKVTGDLREATVYYTVMGETIDAEPDYDAAAAGLAKAKGVLR
SKVGAGTGVKFTPSLAFVLDKVPDAAREMEELLARARAADAEVARVAAEARHAGEPDPYKTDRDDAE
>Mature_147_residues
MVDQARARRLAKRISEIVATAIEYEVKDPRLRFVTITDAKVTGDLREATVYYTVMGETIDAEPDYDAAAAGLAKAKGVLR
SKVGAGTGVKFTPSLAFVLDKVPDAAREMEELLARARAADAEVARVAAEARHAGEPDPYKTDRDDAE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_NOCFA (Q5YSC8)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_120277.1
- ProteinModelPortal:   Q5YSC8
- SMR:   Q5YSC8
- GeneID:   3111435
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa40650
- NMPDR:   fig|247156.1.peg.3924
- HOGENOM:   HBG751055
- OMA:   TGDLHDA
- ProtClustDB:   PRK00521
- BioCyc:   NFAR247156:NFA40650-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15909; Mature: 15909

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDQARARRLAKRISEIVATAIEYEVKDPRLRFVTITDAKVTGDLREATVYYTVMGETID
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHEEEEEEECCCCC
AEPDYDAAAAGLAKAKGVLRSKVGAGTGVKFTPSLAFVLDKVPDAAREMEELLARARAAD
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHCCHHHHHHHHHHHHHHCCH
AEVARVAAEARHAGEPDPYKTDRDDAE
HHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVDQARARRLAKRISEIVATAIEYEVKDPRLRFVTITDAKVTGDLREATVYYTVMGETID
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHEEEEEEECCCCC
AEPDYDAAAAGLAKAKGVLRSKVGAGTGVKFTPSLAFVLDKVPDAAREMEELLARARAAD
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHCCHHHHHHHHHHHHHHCCH
AEVARVAAEARHAGEPDPYKTDRDDAE
HHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA