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The map label for this gene is secF [H]

Identifier: 54025660

GI number: 54025660

Start: 3908356

End: 3909600

Strand: Reverse

Name: secF [H]

Synonym: nfa36900

Alternate gene names: 54025660

Gene position: 3909600-3908356 (Counterclockwise)

Preceding gene: 54025661

Following gene: 54025659

Centisome position: 64.93

GC content: 69.32

Gene sequence:

>1245_bases
ATGACGAACGGCAACAGCACTCCGTCGCTGCGCAAGGACGGCGGCCGCGACGAGGACCGCGCGCAGAGCGCGGTCGACGA
CTTCGCCTACGGCTCGGGCGCGCCCCGGCACGGCTTCTTCAACCGCCTCTACACCGGCACCGGCGCGATCGACGTGATCG
GCAAGCGGCGCATGTGGTACGCGATCACCGCGCTGATCGTGCTGATCTCGCTGGCCTCGATGTTGGTGCGCGGCTTCAAC
TTCGGCATCGACTTCGAAGGCGGCTCGCGCATCCAGTTCCCGGCGGGGGACGCCACCACCAGCGAGGTGGAGACCGTCTA
CCACAACACCCTCGGCACCGATCCGGTCTCGGTGCAGACCGTCGGCAGCGGCTCCACCGCCACCATGCTGATCCGCTCCG
AGGCGCTCAGCACCGAGCAGGCCGATCAGCTGGCCAGTGCGCTGTTCACGGAATTCCAGCCGCTGGGCAACGACGGACAG
CCGAGCCGGGCCGCCATCAGCACCTCCGACGTCAGCGAGACCTGGGGTGACCAGATCACCCGCAAGGCGCTGATCGCGCT
GCTGGTGTTCCTGGTGATCGTGTCCGTCTACATCGCCGTCCGCTTCGAACGCGACATGGCGATCGCGGCGATGGCCGCGC
TGGTGTTCGACGTGGGCGTGACCGCGGGCATCTACTCGCTGGTCGGGCTCGAGGTGACCCCGGCGACGGTGATCGGCATC
CTCACCATTCTCGGCTTCTCGCTCTACGACTCGGTGGTCGTGTTCGACAAGGTCGAGGAGAACACGCGCGGCATCCTGCA
CCTGAACCGGCGCACCTACGCCGAGCAGGCGAATCTGGCGGTCAACCAGACCCTGATGCGCTCGATCAACACCGCCCTCA
TCGGTATCCTGCCGATCGTCGGCTTGATCGTGATCGCGGTGTGGATGCTCGGCGTGGGCACCCTCAAGGATCTCGCGCTG
GTGCAGCTGGTCGGTCTGCTGGTCGGCACCTACTCGTCGATCTTCTTCGCCACCCCGCTGCTGGTCTCGCTCAAGGAGCG
GTGGGGCCCGGTCGCCGCGCACACCAGGAAGGTGCTGGCGAAGCGCTCGAACGTGGCCTCGGCGCGCGCCGCGGCCGAGG
CCGACCGGCGGGTGTCGGTCGCCACGGGCCGGCCTGCCGCGCCGGGCGGCCCGGCACGACCGCGGCCGAACGCCGCGCCG
CGGCCGGGCGCGCGGCCCTCGGGCAAGCGGCATCGCAGGAACTGA

Upstream 100 bases:

>100_bases
CGTTCTGGTCGAAACCCTCGGTGAACGGTCTGGGTGCGATCCAGGAGGTCGCCCGTGAGCGCAGGGCCGCCGAGTCGGCC
GCGGAAGGCGTGAGGACGCG

Downstream 100 bases:

>100_bases
CGGGCGGTACACACGACCAGCTAGGGGGTTTCGTTCGATGCGACAGCCACGCAGCGTCGCGGTGCGGCTGGCGGGGGCGT
GCACCGCGCTCGCGCTGGCC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MTNGNSTPSLRKDGGRDEDRAQSAVDDFAYGSGAPRHGFFNRLYTGTGAIDVIGKRRMWYAITALIVLISLASMLVRGFN
FGIDFEGGSRIQFPAGDATTSEVETVYHNTLGTDPVSVQTVGSGSTATMLIRSEALSTEQADQLASALFTEFQPLGNDGQ
PSRAAISTSDVSETWGDQITRKALIALLVFLVIVSVYIAVRFERDMAIAAMAALVFDVGVTAGIYSLVGLEVTPATVIGI
LTILGFSLYDSVVVFDKVEENTRGILHLNRRTYAEQANLAVNQTLMRSINTALIGILPIVGLIVIAVWMLGVGTLKDLAL
VQLVGLLVGTYSSIFFATPLLVSLKERWGPVAAHTRKVLAKRSNVASARAAAEADRRVSVATGRPAAPGGPARPRPNAAP
RPGARPSGKRHRRN

Sequences:

>Translated_414_residues
MTNGNSTPSLRKDGGRDEDRAQSAVDDFAYGSGAPRHGFFNRLYTGTGAIDVIGKRRMWYAITALIVLISLASMLVRGFN
FGIDFEGGSRIQFPAGDATTSEVETVYHNTLGTDPVSVQTVGSGSTATMLIRSEALSTEQADQLASALFTEFQPLGNDGQ
PSRAAISTSDVSETWGDQITRKALIALLVFLVIVSVYIAVRFERDMAIAAMAALVFDVGVTAGIYSLVGLEVTPATVIGI
LTILGFSLYDSVVVFDKVEENTRGILHLNRRTYAEQANLAVNQTLMRSINTALIGILPIVGLIVIAVWMLGVGTLKDLAL
VQLVGLLVGTYSSIFFATPLLVSLKERWGPVAAHTRKVLAKRSNVASARAAAEADRRVSVATGRPAAPGGPARPRPNAAP
RPGARPSGKRHRRN
>Mature_413_residues
TNGNSTPSLRKDGGRDEDRAQSAVDDFAYGSGAPRHGFFNRLYTGTGAIDVIGKRRMWYAITALIVLISLASMLVRGFNF
GIDFEGGSRIQFPAGDATTSEVETVYHNTLGTDPVSVQTVGSGSTATMLIRSEALSTEQADQLASALFTEFQPLGNDGQP
SRAAISTSDVSETWGDQITRKALIALLVFLVIVSVYIAVRFERDMAIAAMAALVFDVGVTAGIYSLVGLEVTPATVIGIL
TILGFSLYDSVVVFDKVEENTRGILHLNRRTYAEQANLAVNQTLMRSINTALIGILPIVGLIVIAVWMLGVGTLKDLALV
QLVGLLVGTYSSIFFATPLLVSLKERWGPVAAHTRKVLAKRSNVASARAAAEADRRVSVATGRPAAPGGPARPRPNAAPR
PGARPSGKRHRRN

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=286, Percent_Identity=28.6713286713287, Blast_Score=108, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 44155; Mature: 44024

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNGNSTPSLRKDGGRDEDRAQSAVDDFAYGSGAPRHGFFNRLYTGTGAIDVIGKRRMWY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHCCHHHHH
AITALIVLISLASMLVRGFNFGIDFEGGSRIQFPAGDATTSEVETVYHNTLGTDPVSVQT
HHHHHHHHHHHHHHHHHHHCCCEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCEEEE
VGSGSTATMLIRSEALSTEQADQLASALFTEFQPLGNDGQPSRAAISTSDVSETWGDQIT
ECCCCCEEEEEHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHH
RKALIALLVFLVIVSVYIAVRFERDMAIAAMAALVFDVGVTAGIYSLVGLEVTPATVIGI
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LTILGFSLYDSVVVFDKVEENTRGILHLNRRTYAEQANLAVNQTLMRSINTALIGILPIV
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIVIAVWMLGVGTLKDLALVQLVGLLVGTYSSIFFATPLLVSLKERWGPVAAHTRKVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
KRSNVASARAAAEADRRVSVATGRPAAPGGPARPRPNAAPRPGARPSGKRHRRN
HHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TNGNSTPSLRKDGGRDEDRAQSAVDDFAYGSGAPRHGFFNRLYTGTGAIDVIGKRRMWY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHCCHHHHH
AITALIVLISLASMLVRGFNFGIDFEGGSRIQFPAGDATTSEVETVYHNTLGTDPVSVQT
HHHHHHHHHHHHHHHHHHHCCCEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCEEEE
VGSGSTATMLIRSEALSTEQADQLASALFTEFQPLGNDGQPSRAAISTSDVSETWGDQIT
ECCCCCEEEEEHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHH
RKALIALLVFLVIVSVYIAVRFERDMAIAAMAALVFDVGVTAGIYSLVGLEVTPATVIGI
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LTILGFSLYDSVVVFDKVEENTRGILHLNRRTYAEQANLAVNQTLMRSINTALIGILPIV
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIVIAVWMLGVGTLKDLALVQLVGLLVGTYSSIFFATPLLVSLKERWGPVAAHTRKVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
KRSNVASARAAAEADRRVSVATGRPAAPGGPARPRPNAAPRPGARPSGKRHRRN
HHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]