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The map label for this gene is secD [H]

Identifier: 54025661

GI number: 54025661

Start: 3909597

End: 3911282

Strand: Reverse

Name: secD [H]

Synonym: nfa36910

Alternate gene names: 54025661

Gene position: 3911282-3909597 (Counterclockwise)

Preceding gene: 54025662

Following gene: 54025660

Centisome position: 64.96

GC content: 71.41

Gene sequence:

>1686_bases
GTGCCACCTTCCCAGGGATCGGCGCATCCGCTGCGGCTGCTCGGTGTCTACGCCGCGCTGCTGGCCGTGATCTATGCGCT
GGTGTTCTTCACCGGTGACCAATCCCCGACACCCAAGCTCGGCATCGACCTGCAGGGCGGCACCCGCGTCACGCTGACCG
CGCGCACCCCGGACGGCAGCAGGCCGAGCCAGGACAGTCTGCGCAAGGCACAGGAGATCATCGAGAACCGCGTCAACGGT
CTCGGCGTCGGTGGCTCCGAGGTGGCGATCGAGGGTGACAACATCGTCATCACGGTGCCGGGCGACGACGGCCAGCAGGC
CCGCGCCCTGGCCACCACCGCCAAGCTCTACATCCGCCCGGTGCTCGCGGCCCAGCAGGCCGGCGCGGCCGCGCAGCCCG
CCCCGGCGCCGGCCACCCCCGCGCCCGCCGAGCCCGCGCCCGCCACCGCACCGGCACCCGCGCCCGCGGCCCCGGAGGCC
GAGGCGCCGGTGGACACCGCGCCCCAGCAGCGCGTCTTCCCCGCGCAGGCGCCGCCGACCACCGACGACGACAACCTCAC
CCCGCAGGAACGCGCGCAGCGCGAGATCACCGCGGCCAAGCAGACCCGGCAGAGCACCGACCCGGCCGTGCAGCAGGCCG
CCATGGCGGCGCTGGACTGCTCGAAGCAGGACCCGCTCGCGGGCAACGACGACCCGAATCTGCCGCTGGTCACCTGCTCG
CAGGACGGCACCGAGGTGTTCCTGCTCGACAAGACCCGCATCGACGGCCAGGAGATCAAGGACGCGGTGGCGAACCTCGA
CCAGCAGCAGTCGCGCTGGGTGGTCGACCTGGAGTTCAAGTCCAGCGGCAGCGACGCCTGGGCGTCGCTGACCGGTGAGT
ACCTGTACAAGCGGGTGGCCTTCACCCTCGACTCCGAGGTGGTGAGCGCGCCGCAGGTGCAGGCGGGCCCGCAGCTGGGC
GGCCGCACCCAGATCTCCGGGCAGTTCACCGCCGCCTCGGCCAAGGAACTGGCCAACACCCTCAAGTACGGGTCGCTGCC
GCTGTCGTTCCAGACCTCCGAGGCGGAGACCGTCTCGGCGACGCTCGGCCTGTCCTCGATGCGGGCCGGTCTGATCGCGG
GCGCGGTCGGCCTGGCCGTGGTGTTGCTGTACTGCCTGGTCTACTACCGGATGCTCGGCCTGCTGACCGGCCTGTCGCTG
GTCGCCTCCGGCCTGGCCGTCTACGGACTGATGGTCCTGCTCGGCCGCTGGATCGGCTTCACCCTCGACCTGGCGGGCAT
CGCCGGTCTGATCATCGGCATCGGCATGACCGCCGACTCCTTCGTGGTGTTCTTCGAACGCATCAAGGACGAGATGCGCG
AGGGCCGCAGCTTCCGGTCGGCGGTGCCGCGCGGCTGGCAGCGGGCGCGACGCACGATCCTGTCCGGCAACGGCGTGAGC
TTCATCGCCGCCGCGGTGCTGTACGTGCTGGCGGTGGGACAGGTCAAGGGCTTCGCCTTCACCCTCGGACTGACCACCAT
CCTCGACGTGGTGGTGGTGTTCCTGGTGACCGCGCCGCTGGTGCTGCTGGCCTCGCGCTCGGCGTTCTGGTCGAAACCCT
CGGTGAACGGTCTGGGTGCGATCCAGGAGGTCGCCCGTGAGCGCAGGGCCGCCGAGTCGGCCGCGGAAGGCGTGAGGACG
CGATGA

Upstream 100 bases:

>100_bases
GACCTCCCTACCGCCGCCGCGGCGGGCCGGACGCGTGCGCGCCCGGCGGCCGCGGTGTGCGTCCGTTCCACCCGCGACTT
CCGCCTAGGAGAGACGAACT

Downstream 100 bases:

>100_bases
CGAACGGCAACAGCACTCCGTCGCTGCGCAAGGACGGCGGCCGCGACGAGGACCGCGCGCAGAGCGCGGTCGACGACTTC
GCCTACGGCTCGGGCGCGCC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 561; Mature: 560

Protein sequence:

>561_residues
MPPSQGSAHPLRLLGVYAALLAVIYALVFFTGDQSPTPKLGIDLQGGTRVTLTARTPDGSRPSQDSLRKAQEIIENRVNG
LGVGGSEVAIEGDNIVITVPGDDGQQARALATTAKLYIRPVLAAQQAGAAAQPAPAPATPAPAEPAPATAPAPAPAAPEA
EAPVDTAPQQRVFPAQAPPTTDDDNLTPQERAQREITAAKQTRQSTDPAVQQAAMAALDCSKQDPLAGNDDPNLPLVTCS
QDGTEVFLLDKTRIDGQEIKDAVANLDQQQSRWVVDLEFKSSGSDAWASLTGEYLYKRVAFTLDSEVVSAPQVQAGPQLG
GRTQISGQFTAASAKELANTLKYGSLPLSFQTSEAETVSATLGLSSMRAGLIAGAVGLAVVLLYCLVYYRMLGLLTGLSL
VASGLAVYGLMVLLGRWIGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWQRARRTILSGNGVS
FIAAAVLYVLAVGQVKGFAFTLGLTTILDVVVVFLVTAPLVLLASRSAFWSKPSVNGLGAIQEVARERRAAESAAEGVRT
R

Sequences:

>Translated_561_residues
MPPSQGSAHPLRLLGVYAALLAVIYALVFFTGDQSPTPKLGIDLQGGTRVTLTARTPDGSRPSQDSLRKAQEIIENRVNG
LGVGGSEVAIEGDNIVITVPGDDGQQARALATTAKLYIRPVLAAQQAGAAAQPAPAPATPAPAEPAPATAPAPAPAAPEA
EAPVDTAPQQRVFPAQAPPTTDDDNLTPQERAQREITAAKQTRQSTDPAVQQAAMAALDCSKQDPLAGNDDPNLPLVTCS
QDGTEVFLLDKTRIDGQEIKDAVANLDQQQSRWVVDLEFKSSGSDAWASLTGEYLYKRVAFTLDSEVVSAPQVQAGPQLG
GRTQISGQFTAASAKELANTLKYGSLPLSFQTSEAETVSATLGLSSMRAGLIAGAVGLAVVLLYCLVYYRMLGLLTGLSL
VASGLAVYGLMVLLGRWIGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWQRARRTILSGNGVS
FIAAAVLYVLAVGQVKGFAFTLGLTTILDVVVVFLVTAPLVLLASRSAFWSKPSVNGLGAIQEVARERRAAESAAEGVRT
R
>Mature_560_residues
PPSQGSAHPLRLLGVYAALLAVIYALVFFTGDQSPTPKLGIDLQGGTRVTLTARTPDGSRPSQDSLRKAQEIIENRVNGL
GVGGSEVAIEGDNIVITVPGDDGQQARALATTAKLYIRPVLAAQQAGAAAQPAPAPATPAPAEPAPATAPAPAPAAPEAE
APVDTAPQQRVFPAQAPPTTDDDNLTPQERAQREITAAKQTRQSTDPAVQQAAMAALDCSKQDPLAGNDDPNLPLVTCSQ
DGTEVFLLDKTRIDGQEIKDAVANLDQQQSRWVVDLEFKSSGSDAWASLTGEYLYKRVAFTLDSEVVSAPQVQAGPQLGG
RTQISGQFTAASAKELANTLKYGSLPLSFQTSEAETVSATLGLSSMRAGLIAGAVGLAVVLLYCLVYYRMLGLLTGLSLV
ASGLAVYGLMVLLGRWIGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWQRARRTILSGNGVSF
IAAAVLYVLAVGQVKGFAFTLGLTTILDVVVVFLVTAPLVLLASRSAFWSKPSVNGLGAIQEVARERRAAESAAEGVRTR

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=287, Percent_Identity=27.8745644599303, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 58875; Mature: 58744

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPSQGSAHPLRLLGVYAALLAVIYALVFFTGDQSPTPKLGIDLQGGTRVTLTARTPDGS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEECCCCC
RPSQDSLRKAQEIIENRVNGLGVGGSEVAIEGDNIVITVPGDDGQQARALATTAKLYIRP
CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHH
VLAAQQAGAAAQPAPAPATPAPAEPAPATAPAPAPAAPEAEAPVDTAPQQRVFPAQAPPT
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TDDDNLTPQERAQREITAAKQTRQSTDPAVQQAAMAALDCSKQDPLAGNDDPNLPLVTCS
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC
QDGTEVFLLDKTRIDGQEIKDAVANLDQQQSRWVVDLEFKSSGSDAWASLTGEYLYKRVA
CCCCEEEEEECCCCCHHHHHHHHHCCCHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
FTLDSEVVSAPQVQAGPQLGGRTQISGQFTAASAKELANTLKYGSLPLSFQTSEAETVSA
HHHCHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCHHHHH
TLGLSSMRAGLIAGAVGLAVVLLYCLVYYRMLGLLTGLSLVASGLAVYGLMVLLGRWIGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWQRARRTILSGNGVS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHCCCCHH
FIAAAVLYVLAVGQVKGFAFTLGLTTILDVVVVFLVTAPLVLLASRSAFWSKPSVNGLGA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHH
IQEVARERRAAESAAEGVRTR
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PPSQGSAHPLRLLGVYAALLAVIYALVFFTGDQSPTPKLGIDLQGGTRVTLTARTPDGS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEECCCCC
RPSQDSLRKAQEIIENRVNGLGVGGSEVAIEGDNIVITVPGDDGQQARALATTAKLYIRP
CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHH
VLAAQQAGAAAQPAPAPATPAPAEPAPATAPAPAPAAPEAEAPVDTAPQQRVFPAQAPPT
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TDDDNLTPQERAQREITAAKQTRQSTDPAVQQAAMAALDCSKQDPLAGNDDPNLPLVTCS
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC
QDGTEVFLLDKTRIDGQEIKDAVANLDQQQSRWVVDLEFKSSGSDAWASLTGEYLYKRVA
CCCCEEEEEECCCCCHHHHHHHHHCCCHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
FTLDSEVVSAPQVQAGPQLGGRTQISGQFTAASAKELANTLKYGSLPLSFQTSEAETVSA
HHHCHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCHHHHH
TLGLSSMRAGLIAGAVGLAVVLLYCLVYYRMLGLLTGLSLVASGLAVYGLMVLLGRWIGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWQRARRTILSGNGVS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHCCCCHH
FIAAAVLYVLAVGQVKGFAFTLGLTTILDVVVVFLVTAPLVLLASRSAFWSKPSVNGLGA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHH
IQEVARERRAAESAAEGVRTR
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]