BacMap

Definition	Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence.
Accession	NC_006350
Length	4,074,542

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The map label for this gene is yohF [C]

Identifier: 53719402

GI number: 53719402

Start: 2125986

End: 2126732

Strand: Reverse

Name: yohF [C]

Synonym: BPSL1789

Alternate gene names: 53719402

Gene position: 2126732-2125986 (Counterclockwise)

Preceding gene: 53719403

Following gene: 53719401

Centisome position: 52.2

GC content: 73.49

Gene sequence:

>747_bases
ATGAGCGTCGCTTTCGATTTCCACGGCCGGTCGTTCCTCGTGACGGGCGCATCGAGCGGCATCGGCCGCGCCGCGGCCGT
CGCGCTGCGCGGCGGCGGCGCGCGCGTCGTCGCCGCCGCGCGCAACGCGCGCGAGCTCGAGCGGCTCGCGCACGAAACGG
GCTGCGAGCCGCTCGAGCTCGACGTCGGCTGCGATGCGTCGGTGCGCGCGGCGCTTTCCGGCGAACGGATGCGCGATGCG
TTCGACGGGCTGATCAATTGCGCGGGCGTGACGAGCCTTGCCGCGGCGATCGACACGACGGCCGACGAATTCGACCGCGT
GATGGCCGTCAACGCGCGCGGCGCGATGCTGGTCGCGCGGCATGTCGCGCGCGCGATGATTCGCGCGGGGCGGGGCGGCA
GCATCGTCAACGTATCGAGCCAGGCGGCGCTCGTCGCGCTGCCGTCGCATCTCGCCTACTGCGCGTCGAAGGCCGCGCTC
GACGCGATGACGCGCGTGCTGTGCGTGGAGCTCGGGCCGCACGGCATTCGCGTGAACAGCGTCAACCCGACCGTCACGCT
CACGCCGATGGCCGAGCGCGCGTGGAGCGATCCGCACGCGAGCGGGCCGATGCTCGCGGCGATTCCGCTCGGGCGCTTCG
CGCGCGTCGCGGACGTCGTCGCGCCGATCCTGTTCCTGTCGAGCGACGCGGCGGCGATGGTGAGCGGCGTCGCGCTGCCG
GTGGACGGCGGCTACACCGCGCGATAG

Upstream 100 bases:

>100_bases
GCCCCGACGCGCGTCACGCGGCGTTGCACGACGCGCGCTTCGCGCTGTACGCCGGGCTCTATCCGGCGCTCCAACCCTTC
ATGCACGGATTGCAGACATC

Downstream 100 bases:

>100_bases
CGCGCCCGGCGCTCGCCGGGCGTCGGGCGTCGGGCGCGTTCGCGGCGCCTGGGACGAGCGTGACGCCCGGGGCGCGTGCG
ATGTGCGTCCCTGCGGGCGC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSVAFDFHGRSFLVTGASSGIGRAAAVALRGGGARVVAAARNARELERLAHETGCEPLELDVGCDASVRAALSGERMRDA
FDGLINCAGVTSLAAAIDTTADEFDRVMAVNARGAMLVARHVARAMIRAGRGGSIVNVSSQAALVALPSHLAYCASKAAL
DAMTRVLCVELGPHGIRVNSVNPTVTLTPMAERAWSDPHASGPMLAAIPLGRFARVADVVAPILFLSSDAAAMVSGVALP
VDGGYTAR

Sequences:

>Translated_248_residues
MSVAFDFHGRSFLVTGASSGIGRAAAVALRGGGARVVAAARNARELERLAHETGCEPLELDVGCDASVRAALSGERMRDA
FDGLINCAGVTSLAAAIDTTADEFDRVMAVNARGAMLVARHVARAMIRAGRGGSIVNVSSQAALVALPSHLAYCASKAAL
DAMTRVLCVELGPHGIRVNSVNPTVTLTPMAERAWSDPHASGPMLAAIPLGRFARVADVVAPILFLSSDAAAMVSGVALP
VDGGYTAR
>Mature_247_residues
SVAFDFHGRSFLVTGASSGIGRAAAVALRGGGARVVAAARNARELERLAHETGCEPLELDVGCDASVRAALSGERMRDAF
DGLINCAGVTSLAAAIDTTADEFDRVMAVNARGAMLVARHVARAMIRAGRGGSIVNVSSQAALVALPSHLAYCASKAALD
AMTRVLCVELGPHGIRVNSVNPTVTLTPMAERAWSDPHASGPMLAAIPLGRFARVADVVAPILFLSSDAAAMVSGVALPV
DGGYTAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=47.7178423236515, Blast_Score=201, Evalue=3e-52,
Organism=Homo sapiens, GI15277342, Length=248, Percent_Identity=33.8709677419355, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI10190704, Length=241, Percent_Identity=34.4398340248963, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=30.327868852459, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI40254992, Length=234, Percent_Identity=31.6239316239316, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=30.8943089430894, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI4503817, Length=202, Percent_Identity=31.1881188118812, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI126723750, Length=247, Percent_Identity=27.1255060728745, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI7706318, Length=183, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=29.6747967479675, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI59889578, Length=152, Percent_Identity=32.8947368421053, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI20149619, Length=184, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI4758504, Length=192, Percent_Identity=32.2916666666667, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=32.520325203252, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=31.0756972111554, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=33.0612244897959, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=29.5275590551181, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=34, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=29.4820717131474, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=33.9920948616601, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=30.6451612903226, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789057, Length=245, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786701, Length=203, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=30.2788844621514, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=27.6422764227642, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=27.6, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787545, Length=252, Percent_Identity=27.3809523809524, Blast_Score=64, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=45.4183266932271, Blast_Score=199, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=32.2709163346614, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=33.0827067669173, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=238, Percent_Identity=31.9327731092437, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=30.3643724696356, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=34.0909090909091, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=32.7067669172932, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=29.2682926829268, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=32.6923076923077, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=31.1538461538462, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=32.1969696969697, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=29.811320754717, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=31.5789473684211, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=28.6259541984733, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=26.4822134387352, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=29.9242424242424, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=27.2727272727273, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=27.5590551181102, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=29.5454545454545, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=30.9701492537313, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=28.030303030303, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=233, Percent_Identity=27.8969957081545, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=26.6393442622951, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=28.0898876404494, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=29.7794117647059, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=27.6119402985075, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=215, Percent_Identity=29.3023255813954, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17538182, Length=190, Percent_Identity=30.5263157894737, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=176, Percent_Identity=31.8181818181818, Blast_Score=69, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=26.3565891472868, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=41.9753086419753, Blast_Score=172, Evalue=2e-43,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=36.9477911646586, Blast_Score=141, Evalue=4e-34,
Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=37.3493975903614, Blast_Score=138, Evalue=4e-33,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=34.9206349206349, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI23397609, Length=242, Percent_Identity=35.1239669421488, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24639444, Length=242, Percent_Identity=34.297520661157, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24644337, Length=174, Percent_Identity=38.5057471264368, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=28.740157480315, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI21356301, Length=206, Percent_Identity=32.0388349514563, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI17737361, Length=194, Percent_Identity=33.5051546391753, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=31.1224489795918, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571387, Length=260, Percent_Identity=27.6923076923077, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25433; Mature: 25301

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAFDFHGRSFLVTGASSGIGRAAAVALRGGGARVVAAARNARELERLAHETGCEPLEL
CCEEEEECCCEEEEECCCCCCCCEEEEEEECCCEEEEEEHHCHHHHHHHHHHHCCCEEEE
DVGCDASVRAALSGERMRDAFDGLINCAGVTSLAAAIDTTADEFDRVMAVNARGAMLVAR
ECCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEECCCCHHHHHH
HVARAMIRAGRGGSIVNVSSQAALVALPSHLAYCASKAALDAMTRVLCVELGPHGIRVNS
HHHHHHHHCCCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEC
VNPTVTLTPMAERAWSDPHASGPMLAAIPLGRFARVADVVAPILFLSSDAAAMVSGVALP
CCCEEEECCCHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHCCEEEE
VDGGYTAR
CCCCCCCC
>Mature Secondary Structure 
SVAFDFHGRSFLVTGASSGIGRAAAVALRGGGARVVAAARNARELERLAHETGCEPLEL
CEEEEECCCEEEEECCCCCCCCEEEEEEECCCEEEEEEHHCHHHHHHHHHHHCCCEEEE
DVGCDASVRAALSGERMRDAFDGLINCAGVTSLAAAIDTTADEFDRVMAVNARGAMLVAR
ECCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEECCCCHHHHHH
HVARAMIRAGRGGSIVNVSSQAALVALPSHLAYCASKAALDAMTRVLCVELGPHGIRVNS
HHHHHHHHCCCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEC
VNPTVTLTPMAERAWSDPHASGPMLAAIPLGRFARVADVVAPILFLSSDAAAMVSGVALP
CCCEEEECCCHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHCCEEEE
VDGGYTAR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]