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The map label for this gene is fecI [C]

Identifier: 53719401

GI number: 53719401

Start: 2124207

End: 2124830

Strand: Reverse

Name: fecI [C]

Synonym: BPSL1787

Alternate gene names: 53719401

Gene position: 2124830-2124207 (Counterclockwise)

Preceding gene: 53719402

Following gene: 53719400

Centisome position: 52.15

GC content: 72.28

Gene sequence:

>624_bases
TTGCGCGCGCCGTCGCGGCCTGCGGCGCGCACGCCGGGCGCGCGCGAGCACGGCGCGCTCGTCGATGTGCTGGTCGCGAA
CCGGCCGATGCTCGTCAAGCTCGCGCGCGGCTTCGTCGGCTGCGCGAGCCGCGCGGAGGACGTGGTGCACGACGTGTTCG
TGAAGCTCGTCGATTTTCCGAACCAGGACGCGATCCGGCAGCCCGTCGCGTACGTGACGCGGATGGTTCGCAACGCGTCG
ATCGACGCGTGCCGCCGCCAGACGCTCGAGAACACCTACCACGCGGACGAGGACGACGGCCTCGACGTGCCGTCGCCCGA
GCTGTCGCCGGAGGCCGCGCTCGTCGTGCGCGACACGCTGCGCCACGTGTACGACGCGCTCGCGCAACTGCCCGCGCGCA
GCCGCGCCGCGTTCGAGATGGTGCGGCTGCGCGAGGAGACGCTGCAGAGCGCCGCGCGCGCGCTGAACGTGTCGCAGACG
CTCGTGCACTTCATGGTCCGCGACGCCGAGCGGCACTGCGTCGCGTGCGTCGACGCGTCCGAGCGCGGGCTCGCGTGCCC
GGCGTTTTGCGGCGCCCGCGCGCGGACGGTAAAAAAATGCGTGCGCGATTCGTCTATCGAGTAG

Upstream 100 bases:

>100_bases
TGGAGAATCCATGGCGGAAGTGCTCGCTCGGCCGGCGCCGGCAAAACCGTTACCGATCCTCGCTTCGAACGGGGCGTTTG
CACCCGCCGCCGCGCCCGTC

Downstream 100 bases:

>100_bases
ACGCGGCGCACGCGGTGCGCCGTCCTTCGAACCTTTCCAGCGAGCTTTCCCGATCATGACGCAAGCCCAGCAACCCGCGA
GCGCGCCCGCCGACGCCGAC

Product: extracytoplasmic-function sigma-70 factor

Products: NA

Alternate protein names: Extracytoplasmic-Function Sigma-70 Factor; Extracytoplasmic-Function Sigma-70 Factor PvdS; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-; RNA Polymerase Sigma Factor; Sigma Factor; RNA Polymerase Sigma Factor FECI Protein; RNA Polymerase Sigma-70 Family Protein; Ferric Regulator Sigma-24 Subunit; DNA-Directed RNA Polymerase Sigma-E/Sigma-24/FecI; FecI Like Protein; RNA Polymerase Sigma Factor Protein; ECF Subfamily RNA Polymerase Sigma-70 Factor; Fec I Like Protein; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MRAPSRPAARTPGAREHGALVDVLVANRPMLVKLARGFVGCASRAEDVVHDVFVKLVDFPNQDAIRQPVAYVTRMVRNAS
IDACRRQTLENTYHADEDDGLDVPSPELSPEAALVVRDTLRHVYDALAQLPARSRAAFEMVRLREETLQSAARALNVSQT
LVHFMVRDAERHCVACVDASERGLACPAFCGARARTVKKCVRDSSIE

Sequences:

>Translated_207_residues
MRAPSRPAARTPGAREHGALVDVLVANRPMLVKLARGFVGCASRAEDVVHDVFVKLVDFPNQDAIRQPVAYVTRMVRNAS
IDACRRQTLENTYHADEDDGLDVPSPELSPEAALVVRDTLRHVYDALAQLPARSRAAFEMVRLREETLQSAARALNVSQT
LVHFMVRDAERHCVACVDASERGLACPAFCGARARTVKKCVRDSSIE
>Mature_207_residues
MRAPSRPAARTPGAREHGALVDVLVANRPMLVKLARGFVGCASRAEDVVHDVFVKLVDFPNQDAIRQPVAYVTRMVRNAS
IDACRRQTLENTYHADEDDGLDVPSPELSPEAALVVRDTLRHVYDALAQLPARSRAAFEMVRLREETLQSAARALNVSQT
LVHFMVRDAERHCVACVDASERGLACPAFCGARARTVKKCVRDSSIE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22803; Mature: 22803

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPSRPAARTPGAREHGALVDVLVANRPMLVKLARGFVGCASRAEDVVHDVFVKLVDFP
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NQDAIRQPVAYVTRMVRNASIDACRRQTLENTYHADEDDGLDVPSPELSPEAALVVRDTL
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RHVYDALAQLPARSRAAFEMVRLREETLQSAARALNVSQTLVHFMVRDAERHCVACVDAS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC
ERGLACPAFCGARARTVKKCVRDSSIE
CCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRAPSRPAARTPGAREHGALVDVLVANRPMLVKLARGFVGCASRAEDVVHDVFVKLVDFP
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NQDAIRQPVAYVTRMVRNASIDACRRQTLENTYHADEDDGLDVPSPELSPEAALVVRDTL
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RHVYDALAQLPARSRAAFEMVRLREETLQSAARALNVSQTLVHFMVRDAERHCVACVDAS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC
ERGLACPAFCGARARTVKKCVRDSSIE
CCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA