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The map label for this gene is yafC [H]

Identifier: 53718574

GI number: 53718574

Start: 1083766

End: 1084728

Strand: Reverse

Name: yafC [H]

Synonym: BPSL0932

Alternate gene names: 53718574

Gene position: 1084728-1083766 (Counterclockwise)

Preceding gene: 53718575

Following gene: 53718572

Centisome position: 26.62

GC content: 68.74

Gene sequence:

>963_bases
ATGCGCGAGGTCAATCGTTTCTCCGAGATGGCCGTCTTCGTTCAGGTGATCGAGTCGTGCGGATTCTCGGCGGCGGGACG
ACGGCTCGACATGACGCCGTCGGCGATCAGCAAGTTCGTTCAACGGCTCGAGACGCGGCTCGGCGTGCGCCTGTTGAATC
GCACGACGCGCAAGCTGCAGCTCACGCCCGAAGGCGCCGCGTTTTACGAGCGCTGCGTGCGCATTCTCGAGGACATCGCC
GACGCCGAGCGCGAAGCGACGCACGGCGCGACTCCGCAGGGCCGCGTGCGGATCAATTCGCACGTGCCGTTCGGCAAGCA
TCATCTGATGCCGCTCTTGCCGGAGTTCCAGCGCCGCTATCCGGACATCACGCTCGACATCGTGCTGTCGGATTCGCTCG
TCGATCCGCTCGACGAGCGCAGCGACATCGCGATCCGCTCGGGCGCGCTCGACGATTCGCGGCTCGTGATGCGCAAACTC
GGCGGCAGCCGGATGGTCGTCGTCGGCGCGCCGGCGTATCTCGAGCGCAACGGCGTGCCGGCAACGCCCGACGACCTCGA
CCGCCACAACTGCATCGGCCTGAGCGGCAACGCGAAGGCTTGGCCGTTCGTCGCGGAGGAAGGCCAGCGTCTGCTGCCGT
CGGCCGGCAACCTGCTGCTCGGCGACAACGAGAGCATCCGCGAAGCAGCCGTCTCCGGGCTCGGGCTCGCGCGGCTCGCG
CGCTTTCACGTCGACGCGGACCTCGACGCGGGGCGCCTCGTGCCGGTGCTCGAAGCGTTCAATCCGGGCGACGAAGAAGA
GATCAACGCGGTGTTCGTCGGGCCGAGCGAGCATCTGCCGATGCGCGTGCACGCGCTGCTCGATTTCCTGAAGGAGCGCA
TACGCATCGGCCCGCGCGCCGCCGGCGAGCGCGGCGAGGCATCGGCGCTCGGCGCGCGCGCGTTCGTCACGCGGCTGCGC
TGA

Upstream 100 bases:

>100_bases
TGAAAATCGCTGAATGCGGGAATCGGAAAATCCCGCGAGTTCGAAAACAAGTCGCGGATATACTAGGATTCACCCCATTC
CAAATCTCGTCAAAACGCCC

Downstream 100 bases:

>100_bases
GCGCGTCGCGCCTATTTCACGGTGAACGTATAGCGGCCCTGCGTGCGGTGGCCGTCGGTGGCGAGCGCCACCCACTTGAC
CGTATACACGCCGGCTTGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MREVNRFSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGAAFYERCVRILEDIA
DAEREATHGATPQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITLDIVLSDSLVDPLDERSDIAIRSGALDDSRLVMRKL
GGSRMVVVGAPAYLERNGVPATPDDLDRHNCIGLSGNAKAWPFVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARLA
RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSEHLPMRVHALLDFLKERIRIGPRAAGERGEASALGARAFVTRLR

Sequences:

>Translated_320_residues
MREVNRFSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGAAFYERCVRILEDIA
DAEREATHGATPQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITLDIVLSDSLVDPLDERSDIAIRSGALDDSRLVMRKL
GGSRMVVVGAPAYLERNGVPATPDDLDRHNCIGLSGNAKAWPFVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARLA
RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSEHLPMRVHALLDFLKERIRIGPRAAGERGEASALGARAFVTRLR
>Mature_320_residues
MREVNRFSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGAAFYERCVRILEDIA
DAEREATHGATPQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITLDIVLSDSLVDPLDERSDIAIRSGALDDSRLVMRKL
GGSRMVVVGAPAYLERNGVPATPDDLDRHNCIGLSGNAKAWPFVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARLA
RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSEHLPMRVHALLDFLKERIRIGPRAAGERGEASALGARAFVTRLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=36.8243243243243, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=31.3993174061433, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=32.0819112627986, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=32.5342465753425, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787589, Length=262, Percent_Identity=32.0610687022901, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=27.2727272727273, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI87081978, Length=279, Percent_Identity=29.7491039426523, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789173, Length=243, Percent_Identity=25.9259259259259, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788706, Length=297, Percent_Identity=24.2424242424242, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788481, Length=252, Percent_Identity=25.3968253968254, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788748, Length=126, Percent_Identity=36.5079365079365, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786448, Length=272, Percent_Identity=25.3676470588235, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87082024, Length=244, Percent_Identity=26.6393442622951, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35224; Mature: 35224

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREVNRFSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQ
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTPEGAAFYERCVRILEDIADAEREATHGATPQGRVRINSHVPFGKHHLMPLLPEFQRRY
ECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHCCCCCHHHHHHC
PDITLDIVLSDSLVDPLDERSDIAIRSGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVP
CCEEEEEEECCHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHCCCCCC
ATPDDLDRHNCIGLSGNAKAWPFVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARLA
CCCCCCCCCCEEECCCCCCCCCEEHHCCCEECCCCCCEEECCCHHHHHHHHHHHHHHHHH
RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSEHLPMRVHALLDFLKERIRIGPRA
HHHCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
AGERGEASALGARAFVTRLR
CCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MREVNRFSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQ
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTPEGAAFYERCVRILEDIADAEREATHGATPQGRVRINSHVPFGKHHLMPLLPEFQRRY
ECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHCCCCCHHHHHHC
PDITLDIVLSDSLVDPLDERSDIAIRSGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVP
CCEEEEEEECCHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHCCCCCC
ATPDDLDRHNCIGLSGNAKAWPFVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARLA
CCCCCCCCCCEEECCCCCCCCCEEHHCCCEECCCCCCEEECCCHHHHHHHHHHHHHHHHH
RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSEHLPMRVHALLDFLKERIRIGPRA
HHHCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
AGERGEASALGARAFVTRLR
CCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]