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The map label for this gene is pecT [H]

Identifier: 53718575

GI number: 53718575

Start: 1084930

End: 1085826

Strand: Reverse

Name: pecT [H]

Synonym: BPSL0933

Alternate gene names: 53718575

Gene position: 1085826-1084930 (Counterclockwise)

Preceding gene: 53718577

Following gene: 53718574

Centisome position: 26.65

GC content: 72.69

Gene sequence:

>897_bases
ATGAACGCCGCGCCGGATTCGGCGGCGATGTCGCTCGACATCGTGCTGCTGCGCACCTTTCTCGAAGTCGCCGACCGCCG
CGGCTTCGCGCCCGCCGCCGAACGGCTCGCGCTCACGCCGTCGGCCGTCAGCGGGCACATCAAGCGGCTCGAGCAGGCGA
CGGGCGCGGTGCTGCTCGCCCGCACGACGCGGCGCGTCGAACTCACGCAGGCGGGCGAGACGCTCTATGCGTACGCGCGC
AACATCGTCGAGATGGAGCGCGAGGCGCGTGCGCGGCTGCGCGGCTCGCCGCTGCATGGCCGGCTGCGCATCGGCGCGTC
GGAGGATTTCGCCGGCGCGTGGTTGCCGCAGGTGCTGCACACGTTCGGCCGGCTGCATCCGCGCGCGACGATCGAACTGA
AGGTTGGCATCACCGCGGAATTGCTGCGGCAGCAGGCCTCGGGCCGGCTCGACGTCGTGTTCGGCAAGCACTGCAGCCGC
CTCGACGACGAAGCCGGCGAGCTGCTGTGGGAAGAACCGCTCGTGTGGGCGTTCGCGTCCGACGCCGTGCTCGACGCAAA
CGACGCGCTGCCGCTCGCGCTCTTTCCGCAGCCGTGCGTGTATCGCGAGGCGGCGCTCGCCGCGCTGAACGGCGCGCTGC
GGCCGTTTCGGATCGCGTTCGAAAGCGGCAGCATGGCGGGCTGCATATCGGCGGCGCTCGCGGGGTTCGCGCTCACCGTC
GTCGCGCGCAGCCAGTTGCGCCACGGCCTGCGCGAATGCGGCCCCGACGACGCGCTGCCCGCGTTGCCCGCCGCGCGCTT
CTACGCATTCCCGCATCGGCCGACGCCCGCCGGCACCGCGCTCATCGACGCGGTGCGCGAAACCGGACGCCGCCGCGGCT
TCGCGCCGAAGCCATGA

Upstream 100 bases:

>100_bases
GATCATTCACATTTCACGTCGATCGTAGTCCGATCTCTCATCACGATTCTCAAAGAATCATCATTTATTATTCGAATATC
TCGTCGAATTGGGGACCCGC

Downstream 100 bases:

>100_bases
CGCGCACGCGCGGCCGGGCGCGCTCGTTCGAGACGTTCGTCTCGCAACGAATCGCCAATACGGCTGCCTCGAAGCGCGAT
AAACGATCGGCGACGCAGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNAAPDSAAMSLDIVLLRTFLEVADRRGFAPAAERLALTPSAVSGHIKRLEQATGAVLLARTTRRVELTQAGETLYAYAR
NIVEMEREARARLRGSPLHGRLRIGASEDFAGAWLPQVLHTFGRLHPRATIELKVGITAELLRQQASGRLDVVFGKHCSR
LDDEAGELLWEEPLVWAFASDAVLDANDALPLALFPQPCVYREAALAALNGALRPFRIAFESGSMAGCISAALAGFALTV
VARSQLRHGLRECGPDDALPALPAARFYAFPHRPTPAGTALIDAVRETGRRRGFAPKP

Sequences:

>Translated_298_residues
MNAAPDSAAMSLDIVLLRTFLEVADRRGFAPAAERLALTPSAVSGHIKRLEQATGAVLLARTTRRVELTQAGETLYAYAR
NIVEMEREARARLRGSPLHGRLRIGASEDFAGAWLPQVLHTFGRLHPRATIELKVGITAELLRQQASGRLDVVFGKHCSR
LDDEAGELLWEEPLVWAFASDAVLDANDALPLALFPQPCVYREAALAALNGALRPFRIAFESGSMAGCISAALAGFALTV
VARSQLRHGLRECGPDDALPALPAARFYAFPHRPTPAGTALIDAVRETGRRRGFAPKP
>Mature_298_residues
MNAAPDSAAMSLDIVLLRTFLEVADRRGFAPAAERLALTPSAVSGHIKRLEQATGAVLLARTTRRVELTQAGETLYAYAR
NIVEMEREARARLRGSPLHGRLRIGASEDFAGAWLPQVLHTFGRLHPRATIELKVGITAELLRQQASGRLDVVFGKHCSR
LDDEAGELLWEEPLVWAFASDAVLDANDALPLALFPQPCVYREAALAALNGALRPFRIAFESGSMAGCISAALAGFALTV
VARSQLRHGLRECGPDDALPALPAARFYAFPHRPTPAGTALIDAVRETGRRRGFAPKP

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=258, Percent_Identity=33.7209302325581, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI48994962, Length=164, Percent_Identity=33.5365853658537, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790399, Length=187, Percent_Identity=28.8770053475936, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=306, Percent_Identity=25.8169934640523, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787879, Length=260, Percent_Identity=30, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788748, Length=187, Percent_Identity=29.9465240641711, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=166, Percent_Identity=34.3373493975904, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87081978, Length=97, Percent_Identity=43.298969072165, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=120, Percent_Identity=32.5, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787806, Length=143, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693193, Length=119, Percent_Identity=35.2941176470588, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786713, Length=65, Percent_Identity=52.3076923076923, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32215; Mature: 32215

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAAPDSAAMSLDIVLLRTFLEVADRRGFAPAAERLALTPSAVSGHIKRLEQATGAVLLA
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCEEEEE
RTTRRVELTQAGETLYAYARNIVEMEREARARLRGSPLHGRLRIGASEDFAGAWLPQVLH
ECCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHH
TFGRLHPRATIELKVGITAELLRQQASGRLDVVFGKHCSRLDDEAGELLWEEPLVWAFAS
HHHCCCCCEEEEEEECCHHHHHHHHHCCCEEEEECCHHHHCCHHHHHHHHCCCEEEEEEC
DAVLDANDALPLALFPQPCVYREAALAALNGALRPFRIAFESGSMAGCISAALAGFALTV
CCEECCCCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
VARSQLRHGLRECGPDDALPALPAARFYAFPHRPTPAGTALIDAVRETGRRRGFAPKP
HHHHHHHHHHHHCCCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNAAPDSAAMSLDIVLLRTFLEVADRRGFAPAAERLALTPSAVSGHIKRLEQATGAVLLA
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCEEEEE
RTTRRVELTQAGETLYAYARNIVEMEREARARLRGSPLHGRLRIGASEDFAGAWLPQVLH
ECCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHH
TFGRLHPRATIELKVGITAELLRQQASGRLDVVFGKHCSRLDDEAGELLWEEPLVWAFAS
HHHCCCCCEEEEEEECCHHHHHHHHHCCCEEEEECCHHHHCCHHHHHHHHCCCEEEEEEC
DAVLDANDALPLALFPQPCVYREAALAALNGALRPFRIAFESGSMAGCISAALAGFALTV
CCEECCCCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
VARSQLRHGLRECGPDDALPALPAARFYAFPHRPTPAGTALIDAVRETGRRRGFAPKP
HHHHHHHHHHHHCCCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]