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The map label for this gene is ydeP [C]

Identifier: 52787596

GI number: 52787596

Start: 3743462

End: 3745813

Strand: Direct

Name: ydeP [C]

Synonym: BLi03918

Alternate gene names: 52787596

Gene position: 3743462-3745813 (Clockwise)

Preceding gene: 52787595

Following gene: 52787625

Centisome position: 88.65

GC content: 50.89

Gene sequence:

>2352_bases
ATGGGAAAAACAAAGCATCAAGGTCCGATGAAGCTGAATAAAAAGCCCGCGCCAAAACTGTGGGCGTCTTGGGCGCCGAT
GGGACTCGGAAAGGTAAAGCCGAAGCATATCAGAGATACGATGAAAACAGCGTGGGACAATAAAGACAACCTTCCGTACG
CCTACAGAATTTTGACGCAAGGCGTGTGCGACGGCTGTGCGCTCGGTGTGTCCGGACTCCGCGATCAGACGCTCACAGGC
CCTCATTTATGCACGACGCGGCTGAACGTCCTGCGCTTAAATACAATGCCTGCGATCGAGGACAAATGGCTGTCCGCCGA
CATCGAACAGCTGCGAAAGCTGGACAGCACCGAGCTGAGAAAGCTTGGACGCATCCCCTATCCGCTGTCGAGAAAAAATG
GTGAACGATCGTTCTCGAGAATTTCGTGGGATGAAGCGCTCAGCCGAATCGCGGACAAAATCAAATCGATTGATAAACGG
CAGCTCGCCTTTTATTTAACAGCCAGAGGCATAACGAATGAGGTGTACTATACGGCCGCAAAAGCGGCGCGGTTTATCGG
CACAAACAACATTGACAACGCCTCGCGGATCTGCCACTCGCCAAGCAAAACGGCTTTAAAAAGGTCCCTTGGCATCGGCG
CCTCAAGCTGCAGCTACCGAGACTGGATCGGAACGGATGTCCTCGTCTTCTGGGGGTCTGTCGCTGCCAATAATCAGCCG
GTGTCAACAAAATACATGTATGCCGCCAAAAAAGCGGGAACGAAAATCATTATGATCAATCCGTACCGGGAGCCATCGAT
GGAGAAATACTGGATTCCATCGATACCTGAGAGCGCCCTTTTCGGCACCAAAATCACCGATGATGTTTACCAAGTCAATA
TCGGCGGCGACATTGCCTTTATGAACGGGGTGATGAAGCACTGGTTTGAAATGGAGCGGGAGGCACCAGGTTCAAGCATT
GACCGCGCCTTTATCGATGCACACACAAACGGGTTCACTGAGCTTAAACAGCACATCGAAAAACAAAATTGGAAGACGCT
TGAAGAGTCATCCGGCATATCAAAAGAGAGAATGAAAGAATTCGCCGTCTTGCTGGCCCGGGCGAAAACCGGCGTTTTCA
TTTGGAGCATGGGGCTTACACAGCACCGTTTTGCGACCGACAACATTTCACAGGTGGCAAATCTCGCCCTTTTACAAGGA
TTCATCGGCAGAAAGCATTGCGGCGTTATGCCGATCAGAGGGCACAGCGGTGTGCAGGGCTCTGGAGAAATGGGTGCCGA
TCCTTTCGTCCTCCCAGGCGGTGATTTTGACGAGGAAAATGCCGCACGGATCGAGAAGGTTTGGGGCTTCCGCTTACCGA
CTTGGCAAGGCGATACGATCGGCCAGACGATCGAAAACATGCTGCTGCCGAGCGGAAGCGAAAGAAAAGTAAAAGTGTTT
TATACAAGCGGAGGAAACTTTTTGGAGACGATGCCGAACCCTGATTTTATCAAAAAAGCATTGCAGGAAGTTGAAGTGAG
AGTCCATCAGGACATCATCTTCAATACCTCTACCCTGGTCGATGCCAAAGAGGAAGTCATCATTCTCCCTGCGATGACAA
GGTATGAACAGCCTGGCGGAGGAACCTCGACCAGTACGGAACGGATGGTATACTTCAGCCCCGAAATTAAAGGACCGCGC
ATCGGAGAAGCCCGTTCAGAATGGGAAATTTATGTAGATCTCGCCAAACGGGTCCGGCCCGAAGACAAAGAACTGATCCA
TTTTGACGGCGCTGCGGAAATCCGTGAAGAAATCGCTGCTGCCAACCGGAATTATGACGGGATTCAGCATTTAAAAAAAC
GCGGAGATGTCTTTCAATGGGGCGGCGCCTGGCTTTGTGAAGGCGGTGTTTGTCCGACGGCAGACGGCAGGGGCAACCTG
ATCCCTGTCGATCTTCCTGAAAACAGACAAACGGAAGGACGCTTTCTCGTTACGACAAGGCGCGGAAAACAGTTCAACTC
GATGATTTATAGTGAAAAAGATCCTTTCAACGCTGCAGATCGCCGGGATGTCATGATCAATCCAAAAGATGCCGAGGAGC
TTTATATTCAAGATGGAGAAGCGATCGTTCTATTCAACCGCTACGGAACTTTCCAAGGGCGGGCAAAATATGCCGGCGTA
CAACGCGGAAACACGGCAGTCTACTGGCCGGAAGGAAATGTGCTGATCCCTAAAGGCGTATACGAAAACCATGCCCGTAT
TCCGGAATACAACACGGCGGTCATGATTGAAAAGGCGGAGATTTTCCATTCGAGAAAAGATCCGCGCTATGCAGAAAAAC
GAATCGAAGAACTCGAAATGTCGACCGATTAG

Upstream 100 bases:

>100_bases
TTAGAACGGACATTAAACAGTTGCGGAAAAAAGCGGCGGTTCATGTCTCAAACTCGCTAAAAGGATGATCTGCAGTATCC
GCTGGAAAGGAGAGAAGGGA

Downstream 100 bases:

>100_bases
CTTAACAGTCGGGACGGCTCTGCTGCCGTCCCGTTCTCGTATGGAGTTACTGAGACAGTTTTACGCCTTCTTCTTTCCAT
ACCTTTTTAAAATCAGAAGC

Product: hypothetical protein

Products: CO2; NADH

Alternate protein names: NA

Number of amino acids: Translated: 783; Mature: 782

Protein sequence:

>783_residues
MGKTKHQGPMKLNKKPAPKLWASWAPMGLGKVKPKHIRDTMKTAWDNKDNLPYAYRILTQGVCDGCALGVSGLRDQTLTG
PHLCTTRLNVLRLNTMPAIEDKWLSADIEQLRKLDSTELRKLGRIPYPLSRKNGERSFSRISWDEALSRIADKIKSIDKR
QLAFYLTARGITNEVYYTAAKAARFIGTNNIDNASRICHSPSKTALKRSLGIGASSCSYRDWIGTDVLVFWGSVAANNQP
VSTKYMYAAKKAGTKIIMINPYREPSMEKYWIPSIPESALFGTKITDDVYQVNIGGDIAFMNGVMKHWFEMEREAPGSSI
DRAFIDAHTNGFTELKQHIEKQNWKTLEESSGISKERMKEFAVLLARAKTGVFIWSMGLTQHRFATDNISQVANLALLQG
FIGRKHCGVMPIRGHSGVQGSGEMGADPFVLPGGDFDEENAARIEKVWGFRLPTWQGDTIGQTIENMLLPSGSERKVKVF
YTSGGNFLETMPNPDFIKKALQEVEVRVHQDIIFNTSTLVDAKEEVIILPAMTRYEQPGGGTSTSTERMVYFSPEIKGPR
IGEARSEWEIYVDLAKRVRPEDKELIHFDGAAEIREEIAAANRNYDGIQHLKKRGDVFQWGGAWLCEGGVCPTADGRGNL
IPVDLPENRQTEGRFLVTTRRGKQFNSMIYSEKDPFNAADRRDVMINPKDAEELYIQDGEAIVLFNRYGTFQGRAKYAGV
QRGNTAVYWPEGNVLIPKGVYENHARIPEYNTAVMIEKAEIFHSRKDPRYAEKRIEELEMSTD

Sequences:

>Translated_783_residues
MGKTKHQGPMKLNKKPAPKLWASWAPMGLGKVKPKHIRDTMKTAWDNKDNLPYAYRILTQGVCDGCALGVSGLRDQTLTG
PHLCTTRLNVLRLNTMPAIEDKWLSADIEQLRKLDSTELRKLGRIPYPLSRKNGERSFSRISWDEALSRIADKIKSIDKR
QLAFYLTARGITNEVYYTAAKAARFIGTNNIDNASRICHSPSKTALKRSLGIGASSCSYRDWIGTDVLVFWGSVAANNQP
VSTKYMYAAKKAGTKIIMINPYREPSMEKYWIPSIPESALFGTKITDDVYQVNIGGDIAFMNGVMKHWFEMEREAPGSSI
DRAFIDAHTNGFTELKQHIEKQNWKTLEESSGISKERMKEFAVLLARAKTGVFIWSMGLTQHRFATDNISQVANLALLQG
FIGRKHCGVMPIRGHSGVQGSGEMGADPFVLPGGDFDEENAARIEKVWGFRLPTWQGDTIGQTIENMLLPSGSERKVKVF
YTSGGNFLETMPNPDFIKKALQEVEVRVHQDIIFNTSTLVDAKEEVIILPAMTRYEQPGGGTSTSTERMVYFSPEIKGPR
IGEARSEWEIYVDLAKRVRPEDKELIHFDGAAEIREEIAAANRNYDGIQHLKKRGDVFQWGGAWLCEGGVCPTADGRGNL
IPVDLPENRQTEGRFLVTTRRGKQFNSMIYSEKDPFNAADRRDVMINPKDAEELYIQDGEAIVLFNRYGTFQGRAKYAGV
QRGNTAVYWPEGNVLIPKGVYENHARIPEYNTAVMIEKAEIFHSRKDPRYAEKRIEELEMSTD
>Mature_782_residues
GKTKHQGPMKLNKKPAPKLWASWAPMGLGKVKPKHIRDTMKTAWDNKDNLPYAYRILTQGVCDGCALGVSGLRDQTLTGP
HLCTTRLNVLRLNTMPAIEDKWLSADIEQLRKLDSTELRKLGRIPYPLSRKNGERSFSRISWDEALSRIADKIKSIDKRQ
LAFYLTARGITNEVYYTAAKAARFIGTNNIDNASRICHSPSKTALKRSLGIGASSCSYRDWIGTDVLVFWGSVAANNQPV
STKYMYAAKKAGTKIIMINPYREPSMEKYWIPSIPESALFGTKITDDVYQVNIGGDIAFMNGVMKHWFEMEREAPGSSID
RAFIDAHTNGFTELKQHIEKQNWKTLEESSGISKERMKEFAVLLARAKTGVFIWSMGLTQHRFATDNISQVANLALLQGF
IGRKHCGVMPIRGHSGVQGSGEMGADPFVLPGGDFDEENAARIEKVWGFRLPTWQGDTIGQTIENMLLPSGSERKVKVFY
TSGGNFLETMPNPDFIKKALQEVEVRVHQDIIFNTSTLVDAKEEVIILPAMTRYEQPGGGTSTSTERMVYFSPEIKGPRI
GEARSEWEIYVDLAKRVRPEDKELIHFDGAAEIREEIAAANRNYDGIQHLKKRGDVFQWGGAWLCEGGVCPTADGRGNLI
PVDLPENRQTEGRFLVTTRRGKQFNSMIYSEKDPFNAADRRDVMINPKDAEELYIQDGEAIVLFNRYGTFQGRAKYAGVQ
RGNTAVYWPEGNVLIPKGVYENHARIPEYNTAVMIEKAEIFHSRKDPRYAEKRIEELEMSTD

Specific function: Unknown

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=682, Percent_Identity=27.2727272727273, Blast_Score=223, Evalue=5e-59,
Organism=Escherichia coli, GI3868721, Length=507, Percent_Identity=28.0078895463511, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI3868720, Length=513, Percent_Identity=23.5867446393762, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI3868719, Length=578, Percent_Identity=23.1833910034602, Blast_Score=110, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: 1.2.1.2

Molecular weight: Translated: 88164; Mature: 88032

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKTKHQGPMKLNKKPAPKLWASWAPMGLGKVKPKHIRDTMKTAWDNKDNLPYAYRILTQ
CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH
GVCDGCALGVSGLRDQTLTGPHLCTTRLNVLRLNTMPAIEDKWLSADIEQLRKLDSTELR
HHCCHHHHCCCCCCCCCCCCCHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHH
KLGRIPYPLSRKNGERSFSRISWDEALSRIADKIKSIDKRQLAFYLTARGITNEVYYTAA
HHCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCHHEEEEEEEECCCCCHHHHHHH
KAARFIGTNNIDNASRICHSPSKTALKRSLGIGASSCSYRDWIGTDVLVFWGSVAANNQP
HHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHCCCEEEEEECHHCCCCCC
VSTKYMYAAKKAGTKIIMINPYREPSMEKYWIPSIPESALFGTKITDDVYQVNIGGDIAF
CCHHHEEHHHHCCCEEEEECCCCCCCCCCEECCCCCCHHHCCCCCCCCEEEEECCCCHHH
MNGVMKHWFEMEREAPGSSIDRAFIDAHTNGFTELKQHIEKQNWKTLEESSGISKERMKE
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHH
FAVLLARAKTGVFIWSMGLTQHRFATDNISQVANLALLQGFIGRKHCGVMPIRGHSGVQG
HHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
SGEMGADPFVLPGGDFDEENAARIEKVWGFRLPTWQGDTIGQTIENMLLPSGSERKVKVF
CCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
YTSGGNFLETMPNPDFIKKALQEVEVRVHQDIIFNTSTLVDAKEEVIILPAMTRYEQPGG
EECCCCEEECCCCHHHHHHHHHHHHHHHHHHHEECCHHEECCCCCEEEEECHHHCCCCCC
GTSTSTERMVYFSPEIKGPRIGEARSEWEIYVDLAKRVRPEDKELIHFDGAAEIREEIAA
CCCCCCCEEEEECCCCCCCCCCCCCCHHHHHEEHHHHCCCCCCCEEEECCHHHHHHHHHH
ANRNYDGIQHLKKRGDVFQWGGAWLCEGGVCPTADGRGNLIPVDLPENRQTEGRFLVTTR
CCCCCHHHHHHHHCCCEEEECCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEC
RGKQFNSMIYSEKDPFNAADRRDVMINPKDAEELYIQDGEAIVLFNRYGTFQGRAKYAGV
CCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCEEEEECCCEEEEEECCCCCCCCHHCCCC
QRGNTAVYWPEGNVLIPKGVYENHARIPEYNTAVMIEKAEIFHSRKDPRYAEKRIEELEM
CCCCEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHC
STD
CCC
>Mature Secondary Structure 
GKTKHQGPMKLNKKPAPKLWASWAPMGLGKVKPKHIRDTMKTAWDNKDNLPYAYRILTQ
CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH
GVCDGCALGVSGLRDQTLTGPHLCTTRLNVLRLNTMPAIEDKWLSADIEQLRKLDSTELR
HHCCHHHHCCCCCCCCCCCCCHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHH
KLGRIPYPLSRKNGERSFSRISWDEALSRIADKIKSIDKRQLAFYLTARGITNEVYYTAA
HHCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCHHEEEEEEEECCCCCHHHHHHH
KAARFIGTNNIDNASRICHSPSKTALKRSLGIGASSCSYRDWIGTDVLVFWGSVAANNQP
HHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHCCCEEEEEECHHCCCCCC
VSTKYMYAAKKAGTKIIMINPYREPSMEKYWIPSIPESALFGTKITDDVYQVNIGGDIAF
CCHHHEEHHHHCCCEEEEECCCCCCCCCCEECCCCCCHHHCCCCCCCCEEEEECCCCHHH
MNGVMKHWFEMEREAPGSSIDRAFIDAHTNGFTELKQHIEKQNWKTLEESSGISKERMKE
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHH
FAVLLARAKTGVFIWSMGLTQHRFATDNISQVANLALLQGFIGRKHCGVMPIRGHSGVQG
HHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
SGEMGADPFVLPGGDFDEENAARIEKVWGFRLPTWQGDTIGQTIENMLLPSGSERKVKVF
CCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
YTSGGNFLETMPNPDFIKKALQEVEVRVHQDIIFNTSTLVDAKEEVIILPAMTRYEQPGG
EECCCCEEECCCCHHHHHHHHHHHHHHHHHHHEECCHHEECCCCCEEEEECHHHCCCCCC
GTSTSTERMVYFSPEIKGPRIGEARSEWEIYVDLAKRVRPEDKELIHFDGAAEIREEIAA
CCCCCCCEEEEECCCCCCCCCCCCCCHHHHHEEHHHHCCCCCCCEEEECCHHHHHHHHHH
ANRNYDGIQHLKKRGDVFQWGGAWLCEGGVCPTADGRGNLIPVDLPENRQTEGRFLVTTR
CCCCCHHHHHHHHCCCEEEECCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEC
RGKQFNSMIYSEKDPFNAADRRDVMINPKDAEELYIQDGEAIVLFNRYGTFQGRAKYAGV
CCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCEEEEECCCEEEEEECCCCCCCCHHCCCC
QRGNTAVYWPEGNVLIPKGVYENHARIPEYNTAVMIEKAEIFHSRKDPRYAEKRIEELEM
CCCCEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHC
STD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; NAD+

Specific reaction: formate + NAD+ = CO2 + NADH

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]