| Definition | Bacillus licheniformis ATCC 14580, complete genome. |
|---|---|
| Accession | NC_006322 |
| Length | 4,222,645 |
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The map label for this gene is ymdA
Identifier: 52785677
GI number: 52785677
Start: 1878921
End: 1880480
Strand: Direct
Name: ymdA
Synonym: BLi01919
Alternate gene names: NA
Gene position: 1878921-1880480 (Clockwise)
Preceding gene: 52785676
Following gene: 52785678
Centisome position: 44.5
GC content: 46.09
Gene sequence:
>1560_bases ATGAGTCCTTTAGCAATTCTCATCTCCATTTTGCTGAGCCTATTCTGTTTAGTTGTTGGCTACTATGTTCGTAAAATCAT TGCCGAAGCAAAAATTTCAGGTGCGCGAAATGCAGCCGAACAAATTCTTGGAGACGCAAAGCGGGATGCTGAAGCGTTGA AAAAAGAAGCCCTTCTTGAAGCAAAGGACGAGATTCATACGCTTCGGATAGAAGCTGAACAAGAAGTTCGTGAAAGACGA AATGAGCTTCAAAAACAAGAAAACCGTTTACTTCAAAAGGAAGAGAACCTTGACCGAAAAGATGAATCATTAGATAAACG GGAAGCGATGTTGGAGAAGAAAGATCATTCTCTGAATGAACGACAACAACATATTGAAGAGATGGAAAGCAAAGTGGATG AAATGATTCGTATGCAGCAGTCAGAGTTGGAGCGTATTTCAAGTCTGACGCGAGATGAAGCGAAGCAAATCATTCTGGAA CGGGTTGAAAACGAGCTTTCCCATGACATCGCGATCATGATGAAAGAAAGTGAAAATCGAGCGAAAGAAGAGGCTGATAA AAAGGCGAAAAATATTCTTTCATTGGCTTTACAGCGCTGTGCGGCAGATCATGTGGCCGAGACAACGGTTTCAGTTGTCA ACCTTCCAAATGATGAGATGAAAGGCCGCATTATCGGACGTGAAGGACGTAATATCCGTACATTGGAAACATTGACGGGG ATCGATCTGATCATCGACGATACGCCGGAAGCCGTTATCCTTTCAGGATTTGATCCGATCAGGCGTGAAACAGCCAGGAT CGCTCTTGATAAACTCGTTCAGGATGGCCGCATTCATCCTGCCAGAATCGAAGAAATGGTTGAGAAATCCCGCCGTGAAG TGGATGATTACATCCGCGAAATGGGTGAACAGACGACGTTTGAAGTTGGAGTTCACGGTCTTCATCCCGATTTAATCAAA ATCCTCGGCCGCTTGAAGTTCAGAACGAGCTACGGACAGAATGTACTGAAACATTCAATGGAAGTGGCGTTTCTGACAGG CTTGATGGCTTCAGAGCTCGGAGAAGACGTAACGCTCGCAAAAAGGGCAGGACTTCTTCATGATATCGGGAAAGCGATTG ACCATGAGGTGGAAGGAAGCCACGTTGAAATCGGTGTGGAACTGGCCACCAAGTATAAAGAGCATCCAGTTGTCATCAAC AGTATCGCATCTCACCACGGAGATCAGGAGCCGACTTCCATCATCGCCGTGCTCGTGGCCGCAGCCGATGCGCTGTCTGC CGCAAGACCAGGCGCAAGAAGCGAAACGCTCGAAAACTATATTCGCAGGCTTGAAAAACTGGAAGAAATCTCCGAATCAT ACGAAGGTGTTGAAAAATCATTCGCGATACAAGCGGGACGAGAGGTGCGGATCATGGTCAAACCTGACTCAATCAATGAT CTTGAAGCCCATCGTTTGGCGCGTGATATTCGAAAACGAATTGAGGACGAGCTTGACTACCCTGGACACATCAAGGTAAC CGTAATCAGGGAAACGAGAGCCGTTGAATACGCAAAATAA
Upstream 100 bases:
>100_bases TCACTCCCTGTGAAGGTTCTGTATGTTGAGAAGAAGTACAATGTACATGCCGACACTTACTTTTAGCAAGACAAGTTCAT AGCAAGAGGAGGTGAAAGTT
Downstream 100 bases:
>100_bases AGTGGTGCGAATGCGCCACTTTATTTTTTTGTTTCCTTGTGTAACACTATAATTAAAACCTATTTAAAAAAAGAAAGGGT CAAATTATGAGAATTTTATT
Product: phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 518
Protein sequence:
>519_residues MSPLAILISILLSLFCLVVGYYVRKIIAEAKISGARNAAEQILGDAKRDAEALKKEALLEAKDEIHTLRIEAEQEVRERR NELQKQENRLLQKEENLDRKDESLDKREAMLEKKDHSLNERQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILE RVENELSHDIAIMMKESENRAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG IDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIREMGEQTTFEVGVHGLHPDLIK ILGRLKFRTSYGQNVLKHSMEVAFLTGLMASELGEDVTLAKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVIN SIASHHGDQEPTSIIAVLVAAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIND LEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK
Sequences:
>Translated_519_residues MSPLAILISILLSLFCLVVGYYVRKIIAEAKISGARNAAEQILGDAKRDAEALKKEALLEAKDEIHTLRIEAEQEVRERR NELQKQENRLLQKEENLDRKDESLDKREAMLEKKDHSLNERQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILE RVENELSHDIAIMMKESENRAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG IDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIREMGEQTTFEVGVHGLHPDLIK ILGRLKFRTSYGQNVLKHSMEVAFLTGLMASELGEDVTLAKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVIN SIASHHGDQEPTSIIAVLVAAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIND LEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK >Mature_518_residues SPLAILISILLSLFCLVVGYYVRKIIAEAKISGARNAAEQILGDAKRDAEALKKEALLEAKDEIHTLRIEAEQEVRERRN ELQKQENRLLQKEENLDRKDESLDKREAMLEKKDHSLNERQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILER VENELSHDIAIMMKESENRAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGI DLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIREMGEQTTFEVGVHGLHPDLIKI LGRLKFRTSYGQNVLKHSMEVAFLTGLMASELGEDVTLAKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINS IASHHGDQEPTSIIAVLVAAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSINDL EAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK
Specific function: Catalyzes the hydrolysis of both 2',3'-cyclic AMP and 2',3'-cyclic GMP into 3'-AMP and 3'-GMP, respectively, at the 3'- terminal of RNA [H]
COG id: COG1418
COG function: function code R; Predicted HD superfamily hydrolase
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 KH domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017705 - InterPro: IPR022711 - InterPro: IPR004087 - InterPro: IPR004088 - InterPro: IPR018111 - InterPro: IPR003607 - InterPro: IPR006675 [H]
Pfam domain/function: PF12072 DUF3552; PF00013 KH_1 [H]
EC number: =3.1.4.16 [H]
Molecular weight: Translated: 58853; Mature: 58722
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS50084 KH_TYPE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPLAILISILLSLFCLVVGYYVRKIIAEAKISGARNAAEQILGDAKRDAEALKKEALLE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHH AKDEIHTLRIEAEQEVRERRNELQKQENRLLQKEENLDRKDESLDKREAMLEKKDHSLNE HHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHH RQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILERVENELSHDIAIMMKESENR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHH AKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCEECCCCCCCCHHHHHCC IDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIRE CEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH MGEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAFLTGLMASELGEDVTLA HCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH KRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDQEPTSIIAVLVA HHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHH AADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIND HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH LEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC >Mature Secondary Structure SPLAILISILLSLFCLVVGYYVRKIIAEAKISGARNAAEQILGDAKRDAEALKKEALLE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHH AKDEIHTLRIEAEQEVRERRNELQKQENRLLQKEENLDRKDESLDKREAMLEKKDHSLNE HHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHH RQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILERVENELSHDIAIMMKESENR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHH AKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCEECCCCCCCCHHHHHCC IDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIRE CEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH MGEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAFLTGLMASELGEDVTLA HCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH KRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDQEPTSIIAVLVA HHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHH AADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIND HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH LEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA