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The map label for this gene is ymdB [H]

Identifier: 52785678

GI number: 52785678

Start: 1880567

End: 1881364

Strand: Direct

Name: ymdB [H]

Synonym: BLi01920

Alternate gene names: 52785678

Gene position: 1880567-1881364 (Clockwise)

Preceding gene: 52785677

Following gene: 52785679

Centisome position: 44.54

GC content: 47.74

Gene sequence:

>798_bases
ATGAGAATTTTATTTATTGGAGATGTCGTCGGTTCGCCCGGCAGAGACATGATCAAAACCTATTTGCCGAAGCTGAAGCT
CAAATATAAACCGAATGCCGTCATCGTCAACGGAGAAAACGCCGCACACGGAAAAGGCATTACCGAAAAAATATATCACC
AGCTCATTCAAGCTGGAGCCGACGTTCTCACGATGGGAAACCACACATGGGATAAAAGGGAAATATTTGATTTTATTGAT
GATGCGCCGCAGATCGTCAGACCCGCCAATTTTCCCGAGGGCACGCCTGGAAAAGGCATCACATACATAAAAACAAACGG
TTCGAAGGAACTGGCTGTGATCAATTTGCAAGGCCGCACTTTTCTGCCTGCGATCGATTGCCCATTTCGAAAAGCTGATG
AATTAATAGAAGAAGCGTCAAAAAGAACGCCGTTCATCTTTATCGATTTTCATGCCGAAGCGACAAGCGAAAAGCAGGCG
ATCGGCTGGTATACGGACGGCCGCGTTTCAGCGGTTGTCGGAACGCACACGCATGTTCAGACAGCGGACAACCGCATTCT
TCCGAAAGGCACGGCATATATAACAGACGTGGGGATGACTGGGCCTTACGACGGTATTCTCGGCGTCGACCGCGAGACGA
TTATCAAGCGTTTTAAAACGAGCCTGCCCGTCCGTTTTGAGATTGCCGAAGGCCGCACAACTCTGAGCGGAGTTGTCATC
GACATCGACGAACAGAGCAAGAAAGCCGTTAAAATTGACCGGATATTAATTAATGACGACCACATGTTTTTTGAATAA

Upstream 100 bases:

>100_bases
AATACGCAAAATAAAGTGGTGCGAATGCGCCACTTTATTTTTTTGTTTCCTTGTGTAACACTATAATTAAAACCTATTTA
AAAAAAGAAAGGGTCAAATT

Downstream 100 bases:

>100_bases
CTAAACAGAAAATCATTTTAGAAAAATATTAAAAGGAAAGCAGGAATATCCCGGTCCTATCGTGAATATAGTAAAAATGG
AAGGTACCCTGCTATTTTTG

Product: YmdB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MRILFIGDVVGSPGRDMIKTYLPKLKLKYKPNAVIVNGENAAHGKGITEKIYHQLIQAGADVLTMGNHTWDKREIFDFID
DAPQIVRPANFPEGTPGKGITYIKTNGSKELAVINLQGRTFLPAIDCPFRKADELIEEASKRTPFIFIDFHAEATSEKQA
IGWYTDGRVSAVVGTHTHVQTADNRILPKGTAYITDVGMTGPYDGILGVDRETIIKRFKTSLPVRFEIAEGRTTLSGVVI
DIDEQSKKAVKIDRILINDDHMFFE

Sequences:

>Translated_265_residues
MRILFIGDVVGSPGRDMIKTYLPKLKLKYKPNAVIVNGENAAHGKGITEKIYHQLIQAGADVLTMGNHTWDKREIFDFID
DAPQIVRPANFPEGTPGKGITYIKTNGSKELAVINLQGRTFLPAIDCPFRKADELIEEASKRTPFIFIDFHAEATSEKQA
IGWYTDGRVSAVVGTHTHVQTADNRILPKGTAYITDVGMTGPYDGILGVDRETIIKRFKTSLPVRFEIAEGRTTLSGVVI
DIDEQSKKAVKIDRILINDDHMFFE
>Mature_265_residues
MRILFIGDVVGSPGRDMIKTYLPKLKLKYKPNAVIVNGENAAHGKGITEKIYHQLIQAGADVLTMGNHTWDKREIFDFID
DAPQIVRPANFPEGTPGKGITYIKTNGSKELAVINLQGRTFLPAIDCPFRKADELIEEASKRTPFIFIDFHAEATSEKQA
IGWYTDGRVSAVVGTHTHVQTADNRILPKGTAYITDVGMTGPYDGILGVDRETIIKRFKTSLPVRFEIAEGRTTLSGVVI
DIDEQSKKAVKIDRILINDDHMFFE

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29487; Mature: 29487

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILFIGDVVGSPGRDMIKTYLPKLKLKYKPNAVIVNGENAAHGKGITEKIYHQLIQAGA
CEEEEEECCCCCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHCCC
DVLTMGNHTWDKREIFDFIDDAPQIVRPANFPEGTPGKGITYIKTNGSKELAVINLQGRT
CEEEECCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCE
FLPAIDCPFRKADELIEEASKRTPFIFIDFHAEATSEKQAIGWYTDGRVSAVVGTHTHVQ
ECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCEEEEEEECCEEEE
TADNRILPKGTAYITDVGMTGPYDGILGVDRETIIKRFKTSLPVRFEIAEGRTTLSGVVI
CCCCEECCCCCEEEEECCCCCCCCCEECCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEE
DIDEQSKKAVKIDRILINDDHMFFE
EECCCCCCEEEEEEEEECCCCEEEC
>Mature Secondary Structure
MRILFIGDVVGSPGRDMIKTYLPKLKLKYKPNAVIVNGENAAHGKGITEKIYHQLIQAGA
CEEEEEECCCCCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHCCC
DVLTMGNHTWDKREIFDFIDDAPQIVRPANFPEGTPGKGITYIKTNGSKELAVINLQGRT
CEEEECCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCE
FLPAIDCPFRKADELIEEASKRTPFIFIDFHAEATSEKQAIGWYTDGRVSAVVGTHTHVQ
ECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCEEEEEEECCEEEE
TADNRILPKGTAYITDVGMTGPYDGILGVDRETIIKRFKTSLPVRFEIAEGRTTLSGVVI
CCCCEECCCCCEEEEECCCCCCCCCEECCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEE
DIDEQSKKAVKIDRILINDDHMFFE
EECCCCCCEEEEEEEEECCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]