Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 52785549

GI number: 52785549

Start: 1748229

End: 1748429

Strand: Direct

Name: rpoZ

Synonym: BLi01790

Alternate gene names: 52785549

Gene position: 1748229-1748429 (Clockwise)

Preceding gene: 52785548

Following gene: 52785550

Centisome position: 41.4

GC content: 44.28

Gene sequence:

>201_bases
ATGCTAGATCCGTCAATTGACTCTTTAATGAACAAACTGGATTCAAAATACACGCTCGTTACCGTATCCGCACGGCGCGC
CCGCGAAATGCAGATGAACAAAGACGCGCAGATCGAAAATCCGAAGTCGCATAAATTTGTAGGCAAAGCATTGGAAGAAA
TTGATGCCGGACTGCTTACATTCGAAAAGGAAAATCGCTAA

Upstream 100 bases:

>100_bases
AGCTTGCGTGCGAAAGAATCAAAGCAATCGTTCTCGCCGAACATTTACGGCGCGACCGAGTTGCTCCAAGATATAAGAAA
ATGCTGGAGGTTGAATAAAT

Downstream 100 bases:

>100_bases
TAGCCTTAAAAATAGCAACCTATACACTAGGTTGTTATTTTTTTCAGGGCTGGCGAACAGAACATAAGGGGGAGAAATAC
GATGCTGAAAAATCGCAACA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MLDPSIDSLMNKLDSKYTLVTVSARRAREMQMNKDAQIENPKSHKFVGKALEEIDAGLLTFEKENR

Sequences:

>Translated_66_residues
MLDPSIDSLMNKLDSKYTLVTVSARRAREMQMNKDAQIENPKSHKFVGKALEEIDAGLLTFEKENR
>Mature_66_residues
MLDPSIDSLMNKLDSKYTLVTVSARRAREMQMNKDAQIENPKSHKFVGKALEEIDAGLLTFEKENR

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_BACLD (Q65JS9)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_078963.1
- RefSeq:   YP_091378.1
- ProteinModelPortal:   Q65JS9
- STRING:   Q65JS9
- EnsemblBacteria:   EBBACT00000055681
- EnsemblBacteria:   EBBACT00000058833
- GeneID:   3030946
- GeneID:   3100101
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi01790
- KEGG:   bli:BL02294
- NMPDR:   fig|279010.5.peg.1732
- eggNOG:   COG1758
- GeneTree:   EBGT00050000002319
- HOGENOM:   HBG742204
- OMA:   SKYKLVT
- ProtClustDB:   PRK00392
- BioCyc:   BLIC279010-1:BLI01790-MONOMER
- BioCyc:   BLIC279010:BL02294-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7554; Mature: 7554

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDPSIDSLMNKLDSKYTLVTVSARRAREMQMNKDAQIENPKSHKFVGKALEEIDAGLLT
CCCCCHHHHHHHCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
FEKENR
EECCCC
>Mature Secondary Structure
MLDPSIDSLMNKLDSKYTLVTVSARRAREMQMNKDAQIENPKSHKFVGKALEEIDAGLLT
CCCCCHHHHHHHCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
FEKENR
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA