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The map label for this gene is rpoE [C]

Identifier: 52143032

GI number: 52143032

Start: 2334211

End: 2335080

Strand: Direct

Name: rpoE [C]

Synonym: BCZK2206

Alternate gene names: 52143032

Gene position: 2334211-2335080 (Clockwise)

Preceding gene: 52143033

Following gene: 52143030

Centisome position: 44.03

GC content: 34.48

Gene sequence:

>870_bases
ATGGAAACGGAGCAATTATATGAAGCGTATCAACCATTATTATTTTCATTAGCATATAGAATCCTTGGGAGTGTTATGGA
TGCTGAGGATATCGTTCAGGATGTATTTATCTCATTAAATAATATAGAAGATCTTCAGTCTATAGAAAATATGAAAGCGT
ATTTGTGTAAGATGGCGACAAATCGTTCAATTGATAAATTACGTTCGGCAGCGTATAAACGTAACGTATACGTAGGGATG
TGGTTGCCAGAACCACTAGTAGAAGAAAGTAATGAGCCATCAGAGTCATTTGCAATGAAAGAATCCCTTTCCACCGCATA
TTTATTACTTTTACAACAATTGTCTGAGGTAGAAAGGATTGTTTTCATATTAAGAGAGGTTTTCAGTTATGAATACGAAG
AAATAGCTTCGATTGTTGATAAGAGTAGCGTAAACTGTAGAAAGATTTTTCAACGGGCACGAAAAAGTATATTGGATAAG
CCGAAGCAATCGACATTAAGTACGAAGAAAATGGCTGCTTACGTTGAAAAGTTTGTATCATCCTTACAGTGTGGGGATGC
GCAAGGTATGTTAGAAGTATTAAAAACAGATGCTGTACTCAAAGCTGATGGTGGTGGTAAAGTTACGACTGCGATTCATC
CGATCTATTCTGCGGATCGAATTATACGTTTGTTCTTTGGGATTGTGCAACGATTGACAAAAGAGTATACTGTTGATTTC
AAAATGGTAAATGGTATGCCAGGAGTTATAGTTACAATAAATAATAAAATAACATATGTTCTTTCGTTCGCATTTGAAGA
TGAGAAGATTTCAAACATTTATATGGTAGTTAATCCTGAGAAACTTATGCATTTAAATGTAAAAATATAA

Upstream 100 bases:

>100_bases
TGGGCTGGGCATGATGAAATATTAGCTGATGCTGCAGTAGCAAGCGGAAAACGTGCAGCGTTACACATTTTAAAGCAATT
AGAAAGTGAGGCAGTTCATC

Downstream 100 bases:

>100_bases
AAAACGCATTTCTTCAGAAATGCGTTTTTTTATTACTTTTCTAACATTTCAAGAGGTACATCTTTTTCGCCGGCTACCTC
AAATTTAATTTCCCCGTCTT

Product: RNA polymerase sigma factor SigJ

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor Sigma; RNA Polymerase; Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; ECF-Family Protein RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma-70-Like Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
METEQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEDLQSIENMKAYLCKMATNRSIDKLRSAAYKRNVYVGM
WLPEPLVEESNEPSESFAMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILDK
PKQSTLSTKKMAAYVEKFVSSLQCGDAQGMLEVLKTDAVLKADGGGKVTTAIHPIYSADRIIRLFFGIVQRLTKEYTVDF
KMVNGMPGVIVTINNKITYVLSFAFEDEKISNIYMVVNPEKLMHLNVKI

Sequences:

>Translated_289_residues
METEQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEDLQSIENMKAYLCKMATNRSIDKLRSAAYKRNVYVGM
WLPEPLVEESNEPSESFAMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILDK
PKQSTLSTKKMAAYVEKFVSSLQCGDAQGMLEVLKTDAVLKADGGGKVTTAIHPIYSADRIIRLFFGIVQRLTKEYTVDF
KMVNGMPGVIVTINNKITYVLSFAFEDEKISNIYMVVNPEKLMHLNVKI
>Mature_289_residues
METEQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEDLQSIENMKAYLCKMATNRSIDKLRSAAYKRNVYVGM
WLPEPLVEESNEPSESFAMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILDK
PKQSTLSTKKMAAYVEKFVSSLQCGDAQGMLEVLKTDAVLKADGGGKVTTAIHPIYSADRIIRLFFGIVQRLTKEYTVDF
KMVNGMPGVIVTINNKITYVLSFAFEDEKISNIYMVVNPEKLMHLNVKI

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32959; Mature: 32959

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METEQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEDLQSIENMKAYLCKMAT
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
NRSIDKLRSAAYKRNVYVGMWLPEPLVEESNEPSESFAMKESLSTAYLLLLQQLSEVERI
CCCHHHHHHHHHHCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILDKPKQSTLSTKKMAAYVEKFVS
HHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SLQCGDAQGMLEVLKTDAVLKADGGGKVTTAIHPIYSADRIIRLFFGIVQRLTKEYTVDF
HHCCCCHHHHHHHHHHCCEEEECCCCEEEEHCCCHHHHHHHHHHHHHHHHHHHHHHHEEE
KMVNGMPGVIVTINNKITYVLSFAFEDEKISNIYMVVNPEKLMHLNVKI
EEECCCCCEEEEECCCEEEEEEEEECCCCCCEEEEEECCHHEEEEEECC
>Mature Secondary Structure
METEQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEDLQSIENMKAYLCKMAT
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
NRSIDKLRSAAYKRNVYVGMWLPEPLVEESNEPSESFAMKESLSTAYLLLLQQLSEVERI
CCCHHHHHHHHHHCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILDKPKQSTLSTKKMAAYVEKFVS
HHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SLQCGDAQGMLEVLKTDAVLKADGGGKVTTAIHPIYSADRIIRLFFGIVQRLTKEYTVDF
HHCCCCHHHHHHHHHHCCEEEECCCCEEEEHCCCHHHHHHHHHHHHHHHHHHHHHHHEEE
KMVNGMPGVIVTINNKITYVLSFAFEDEKISNIYMVVNPEKLMHLNVKI
EEECCCCCEEEEECCCEEEEEEEEECCCCCCEEEEEECCHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA