| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51894267
Identifier: 51894267
GI number: 51894267
Start: 3331826
End: 3332953
Strand: Reverse
Name: 51894267
Synonym: STH3132
Alternate gene names: NA
Gene position: 3332953-3331826 (Counterclockwise)
Preceding gene: 51894268
Following gene: 51894266
Centisome position: 93.46
GC content: 70.92
Gene sequence:
>1128_bases GTGTCGCTGAATCGTCTCTGGTCAGGGAGGTGGGGCGTGACCCTCACCGGCGTTGTCGTTGGGATCCTGGCGCCCATCCT GGTGAAGCTGGGCAACCCCGGGAACATGGGGGTGTGCGTCGCCTGTTTCACCCGTGACATCGCGGGCGCCCTCGGGCTGC ACCGGGCTGCGGCCGTGCAGTACATCCGGCCCGAGATCATCGGCCTGGTCCTGGGTGCGACGATCGCCGCGCTGGGCGCC GGCGAGTGGCGCGCCCGGGGCGGCTCCTCGCCGCTGGTGCGGTACATCATGGGCGTCATCGCCGCGATCGGCGCGCTGGT CTTCCTCGGCTGTCCGTGGCGGGCGTTCCTGCGGATCGGCGGCGGCGACTGGAACGCCGTCGTCGGCGTCCTCGGTTTCG CCGCAGGCATCTGGGCGGCCACCTTCTTCCTGCGCCGGGGCTACAGCCTGGGCAAGAGCAAGCCGATGGCGCCGGTCGCC GGCTGGATCATGCCGGCGGCCATGGTCGGCCTCCTGGTGCTCCTCCTGGCGGCGCCGCTGTTCGGGCGGGACGCCGACGG GAACCCGGTGGGCCCGATCTTCTTCAGCACCAGCGGTCCGGGCTCGCAGCACGCCGCCTGGTGGATCTCGCTCCTGTTCG CCCTGGTCATCGGGTACCTGGGGCAGCGGAGCCGCTTCTGTTCGGTGGGGGCGTTCAGAAATCTGTTCATGCTGCGTGAC ACCAAGCTGCTGACGGGCGTCGTCGCCCTGATCATAACCGCCGCGGTGGCGAACCTGGCCCTGGGCCAGTTCCACCCGGG CTTCGCCAACCAGCCCATCGCCCATACGGACGGGCTCTGGAACTTCATGGGCATGCTGCTCTCCGGCCTGGCCTTCACGC TCGGCGGCGGCTGCCCCGGCCGGCAGCTCTTCCTCTCCGGCGAGGGCGACACCGACGCGGCGGTCTTCACCTTCGGACTG CTGACCGGCACCGCCCTGGCGCACAACTTCAACCTGGCCAGCTCGGCCGCGGGGCCGTCGCCCTACGGGCCGGCGGCGGT GATCATCGGGCTCATCGTCGTGGTCGTCCTGGGCTTCACCATGCGGGACGTGGCGGCGGGTGAGGACCAGTCCCGGTCGG CGGCATGA
Upstream 100 bases:
>100_bases TGCTGGGGGACCGGCGCCTGCCTTGCTTTTTCTGTTGGAGGATTCAGGTATCGGACGTCAAAGATTACTACCAATCATCC TTAAGGGAGGCGCATGAGTT
Downstream 100 bases:
>100_bases GCGCCGAACTGATTTACCTGGACAACGCCGCCACCTCGTGGCCCAAGCCGGCGGCGGTGGTGCGGGCGATGGCCGAGTGC CTGGAGAATGAGGCCGGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MSLNRLWSGRWGVTLTGVVVGILAPILVKLGNPGNMGVCVACFTRDIAGALGLHRAAAVQYIRPEIIGLVLGATIAALGA GEWRARGGSSPLVRYIMGVIAAIGALVFLGCPWRAFLRIGGGDWNAVVGVLGFAAGIWAATFFLRRGYSLGKSKPMAPVA GWIMPAAMVGLLVLLLAAPLFGRDADGNPVGPIFFSTSGPGSQHAAWWISLLFALVIGYLGQRSRFCSVGAFRNLFMLRD TKLLTGVVALIITAAVANLALGQFHPGFANQPIAHTDGLWNFMGMLLSGLAFTLGGGCPGRQLFLSGEGDTDAAVFTFGL LTGTALAHNFNLASSAAGPSPYGPAAVIIGLIVVVVLGFTMRDVAAGEDQSRSAA
Sequences:
>Translated_375_residues MSLNRLWSGRWGVTLTGVVVGILAPILVKLGNPGNMGVCVACFTRDIAGALGLHRAAAVQYIRPEIIGLVLGATIAALGA GEWRARGGSSPLVRYIMGVIAAIGALVFLGCPWRAFLRIGGGDWNAVVGVLGFAAGIWAATFFLRRGYSLGKSKPMAPVA GWIMPAAMVGLLVLLLAAPLFGRDADGNPVGPIFFSTSGPGSQHAAWWISLLFALVIGYLGQRSRFCSVGAFRNLFMLRD TKLLTGVVALIITAAVANLALGQFHPGFANQPIAHTDGLWNFMGMLLSGLAFTLGGGCPGRQLFLSGEGDTDAAVFTFGL LTGTALAHNFNLASSAAGPSPYGPAAVIIGLIVVVVLGFTMRDVAAGEDQSRSAA >Mature_374_residues SLNRLWSGRWGVTLTGVVVGILAPILVKLGNPGNMGVCVACFTRDIAGALGLHRAAAVQYIRPEIIGLVLGATIAALGAG EWRARGGSSPLVRYIMGVIAAIGALVFLGCPWRAFLRIGGGDWNAVVGVLGFAAGIWAATFFLRRGYSLGKSKPMAPVAG WIMPAAMVGLLVLLLAAPLFGRDADGNPVGPIFFSTSGPGSQHAAWWISLLFALVIGYLGQRSRFCSVGAFRNLFMLRDT KLLTGVVALIITAAVANLALGQFHPGFANQPIAHTDGLWNFMGMLLSGLAFTLGGGCPGRQLFLSGEGDTDAAVFTFGLL TGTALAHNFNLASSAAGPSPYGPAAVIIGLIVVVVLGFTMRDVAAGEDQSRSAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38823; Mature: 38692
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLNRLWSGRWGVTLTGVVVGILAPILVKLGNPGNMGVCVACFTRDIAGALGLHRAAAVQ CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH YIRPEIIGLVLGATIAALGAGEWRARGGSSPLVRYIMGVIAAIGALVFLGCPWRAFLRIG HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHEEC GGDWNAVVGVLGFAAGIWAATFFLRRGYSLGKSKPMAPVAGWIMPAAMVGLLVLLLAAPL CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC FGRDADGNPVGPIFFSTSGPGSQHAAWWISLLFALVIGYLGQRSRFCSVGAFRNLFMLRD CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH TKLLTGVVALIITAAVANLALGQFHPGFANQPIAHTDGLWNFMGMLLSGLAFTLGGGCPG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC RQLFLSGEGDTDAAVFTFGLLTGTALAHNFNLASSAAGPSPYGPAAVIIGLIVVVVLGFT CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHH MRDVAAGEDQSRSAA HHHHHCCCCCCCCCC >Mature Secondary Structure SLNRLWSGRWGVTLTGVVVGILAPILVKLGNPGNMGVCVACFTRDIAGALGLHRAAAVQ CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH YIRPEIIGLVLGATIAALGAGEWRARGGSSPLVRYIMGVIAAIGALVFLGCPWRAFLRIG HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHEEC GGDWNAVVGVLGFAAGIWAATFFLRRGYSLGKSKPMAPVAGWIMPAAMVGLLVLLLAAPL CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC FGRDADGNPVGPIFFSTSGPGSQHAAWWISLLFALVIGYLGQRSRFCSVGAFRNLFMLRD CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH TKLLTGVVALIITAAVANLALGQFHPGFANQPIAHTDGLWNFMGMLLSGLAFTLGGGCPG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC RQLFLSGEGDTDAAVFTFGLLTGTALAHNFNLASSAAGPSPYGPAAVIIGLIVVVVLGFT CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHH MRDVAAGEDQSRSAA HHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA