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The map label for this gene is yciR [C]

Identifier: 51893986

GI number: 51893986

Start: 3068096

End: 3070234

Strand: Reverse

Name: yciR [C]

Synonym: STH2848

Alternate gene names: 51893986

Gene position: 3070234-3068096 (Counterclockwise)

Preceding gene: 51893987

Following gene: 51893984

Centisome position: 86.09

GC content: 69.52

Gene sequence:

>2139_bases
GTGTCTCTGGTCGGGGCTCGTGAAGAACGTCAGGTCCCGTGCGCCGAGGCCAGGCGGCTGACCCGCGCGGCCGCTGGGGC
TCAACTTCTTCAGGGGGCGCTCATTCTGTTCGCTCCCGCGTACGCCGCGGCGCTCCTGCAGGGGTTTGCTGAGCCGTTGC
GCGTGGTTGTCGGCCTGTCTTTCTTCCTGAGCAGCGCCCTCCTCCTGTGGCTGGAGCGCCCCACGCTCTCGGTTTTCCAG
CGAAGGATTCTCGTGGCTGTCGCCTCCCTGCCCGCTGCGCTGTGCACCGCGATGGCGGTGTGGGTGCGGTGGTGGCTGGG
AGCGCTCTTTTTCGGAGGGATCAACCTCTCCCTGCTCGCGGCGCGGGGGATCCTCCAGCCGGCGAAGCAGCCCTCGGCGC
AGTGGCTTCAGGCCGTCGTGGCCATGGCCCCCAGCGCCCTGATCGCGACCGACCGGGAGCAGCGCATCGTGCTGTTCAAC
CGCCGGTCGGAGGAGATCTTCGGGTACACGAAGCAGGAGGTGCTGGGCAAGCCGATCCGCGCGCTGCTGCCCGAGCTTCC
GGGACCCGCCCCTGGCGAGGGCAAGGGCCTGAACGGCGCCGGGCCTGGGGCGAACGGGCTTCGCTCCGGCGGGCATCCGG
CCACCCAGGGGCACGAGCTGGTCGCACACCACAAGGATGGCAGTTCGTTCCCCGTCGAGGTCTCCGTCGCCGTCACCCGG
GCCGGGGCCGACGAACTGCGCGTGTTGGAGGTGCGCAACATCTCCGGTCGCAGGCGGGTCCAGGCGGCGCTGAAGCGGCT
TGCCAGCCAGGACGCGCTGACGGGGTTGTACAACCGCCGGGCGTTCCAGGCGGAGCTGGAGCGCTACCTCGAGCTCGCGC
GCCACCACCGGGTGCGCGGGGCGCTGCTTTTCATGGACCTCGACCTGCTGAAGTACGTCAACGACACGCTCGGGCACCAG
GCCGGCGACCAGGTGCTGGTGCGCGTTGCCGAGATCATCCAGGCCCACCTGCGGCCCATCGACATCGCGGCCCGCCACGG
CGGCGACGAGTTCGCCATCCTCATGCCGTACACCGGGCGCGAGGCGGTCTCCGTCGCGGAATCGCTGCTGAGGGCGGTGC
AGCAGGAAGAGTTTCGCGTGAAGGGGCGCAGCGTCACCATGACCGCGTCCATCGGCGTCACGTTCTTCCCCGACCACGGC
CTCACCGCCGAGGCGCTGGTCGCCCAGGCCGACATGGCCATGTACCGGGCGAAGGAGTCGGGCCGCAACGCCGTGGCCGT
CTTCGACGGGACCGACGAGCAGCGGATCGAGATGGTCGCCAAGCTCTCCTGGGACCGACGGCTGCGCGAGGCGCTGCGGG
AAGACCGGTTCGTACTGTACGCGCAGCCCATCCTCGACCTGAGGCTGGGCCGGATCACCCGGGTCGAGCTCCTGCTCCGG
TTGGTGGACGAGGGCGGCAATGTGATCGCCCCGGGCGCCTTCCTGGCCGGGGCGGAGCGCTTCGGGTTGATTCAGGAAAT
CGACCGCTGGGTGCTGAGGGAGGCGATCCGGCTCATCGCGCAGCAGGAGCCGGACAGCGAGATCGAGGCGTTCGAGGTCA
ACCTCTCCGGCAAGACCATCTCCGATCCCGGCCTGGCCCGCATGATCCAGGAGGAACTGGAAGCCAGCGGAGCGGACCCT
TCCAAGCTGGTGCTGGAGATTACCGAGACGGCGGCGATCGGCGACCTGGAGCAAGCCCGGCGGTTCATCACGGCGATGCG
CAGGCTGGGATGCCGCTTCGCCCTGGACGACGTGGGGTCCGGCTTCTCCAGCCTGCGCCTGCTGAAGCAGCTGCCCGTCG
ACTACCTGAAGATCGACGGGGCGTTCATCCGCAACCTGCCCACGGAGGACGCGGACAAACACCTGGTCCGGGCCATGGTG
GCCATGGCCCGGACCCAGGGACAGCAGACGATCGCAGAGTTCGTGGACCGCGCCGAGACGCTCCGGCTGGTGCGGGAGTT
CGGCGTGGATTACGCGCAGGGCTACCTTGTCGGTCGGCCGGGCGTCGAATGGCTCCGCCCGGGGGCGGTCAGCTCTGGGC
GGACGACCGCTCCAGGTGGCGCAGGAAGTGGCTCAGGAAAGCCTGGGGCTGCTCAATGA

Upstream 100 bases:

>100_bases
TGCGCTCTGAGCGGCCGTCCCAACGGTCATCCTATGGGCTACGGGGAAGCTGGCTCCGAGCCCTGCCGGCGTTAAGTGAC
GGATGAAAGGTCGATGATGC

Downstream 100 bases:

>100_bases
AGGGCGAGTGGCCGGCGTCTGCGATGACGACCTCCTCATACTCGCCCCCGCCGGCCCGGTAGCGCTCGAGGACGAAGCGG
GTCTGGGCGACCATCGGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 712; Mature: 711

Protein sequence:

>712_residues
MSLVGAREERQVPCAEARRLTRAAAGAQLLQGALILFAPAYAAALLQGFAEPLRVVVGLSFFLSSALLLWLERPTLSVFQ
RRILVAVASLPAALCTAMAVWVRWWLGALFFGGINLSLLAARGILQPAKQPSAQWLQAVVAMAPSALIATDREQRIVLFN
RRSEEIFGYTKQEVLGKPIRALLPELPGPAPGEGKGLNGAGPGANGLRSGGHPATQGHELVAHHKDGSSFPVEVSVAVTR
AGADELRVLEVRNISGRRRVQAALKRLASQDALTGLYNRRAFQAELERYLELARHHRVRGALLFMDLDLLKYVNDTLGHQ
AGDQVLVRVAEIIQAHLRPIDIAARHGGDEFAILMPYTGREAVSVAESLLRAVQQEEFRVKGRSVTMTASIGVTFFPDHG
LTAEALVAQADMAMYRAKESGRNAVAVFDGTDEQRIEMVAKLSWDRRLREALREDRFVLYAQPILDLRLGRITRVELLLR
LVDEGGNVIAPGAFLAGAERFGLIQEIDRWVLREAIRLIAQQEPDSEIEAFEVNLSGKTISDPGLARMIQEELEASGADP
SKLVLEITETAAIGDLEQARRFITAMRRLGCRFALDDVGSGFSSLRLLKQLPVDYLKIDGAFIRNLPTEDADKHLVRAMV
AMARTQGQQTIAEFVDRAETLRLVREFGVDYAQGYLVGRPGVEWLRPGAVSSGRTTAPGGAGSGSGKPGAAQ

Sequences:

>Translated_712_residues
MSLVGAREERQVPCAEARRLTRAAAGAQLLQGALILFAPAYAAALLQGFAEPLRVVVGLSFFLSSALLLWLERPTLSVFQ
RRILVAVASLPAALCTAMAVWVRWWLGALFFGGINLSLLAARGILQPAKQPSAQWLQAVVAMAPSALIATDREQRIVLFN
RRSEEIFGYTKQEVLGKPIRALLPELPGPAPGEGKGLNGAGPGANGLRSGGHPATQGHELVAHHKDGSSFPVEVSVAVTR
AGADELRVLEVRNISGRRRVQAALKRLASQDALTGLYNRRAFQAELERYLELARHHRVRGALLFMDLDLLKYVNDTLGHQ
AGDQVLVRVAEIIQAHLRPIDIAARHGGDEFAILMPYTGREAVSVAESLLRAVQQEEFRVKGRSVTMTASIGVTFFPDHG
LTAEALVAQADMAMYRAKESGRNAVAVFDGTDEQRIEMVAKLSWDRRLREALREDRFVLYAQPILDLRLGRITRVELLLR
LVDEGGNVIAPGAFLAGAERFGLIQEIDRWVLREAIRLIAQQEPDSEIEAFEVNLSGKTISDPGLARMIQEELEASGADP
SKLVLEITETAAIGDLEQARRFITAMRRLGCRFALDDVGSGFSSLRLLKQLPVDYLKIDGAFIRNLPTEDADKHLVRAMV
AMARTQGQQTIAEFVDRAETLRLVREFGVDYAQGYLVGRPGVEWLRPGAVSSGRTTAPGGAGSGSGKPGAAQ
>Mature_711_residues
SLVGAREERQVPCAEARRLTRAAAGAQLLQGALILFAPAYAAALLQGFAEPLRVVVGLSFFLSSALLLWLERPTLSVFQR
RILVAVASLPAALCTAMAVWVRWWLGALFFGGINLSLLAARGILQPAKQPSAQWLQAVVAMAPSALIATDREQRIVLFNR
RSEEIFGYTKQEVLGKPIRALLPELPGPAPGEGKGLNGAGPGANGLRSGGHPATQGHELVAHHKDGSSFPVEVSVAVTRA
GADELRVLEVRNISGRRRVQAALKRLASQDALTGLYNRRAFQAELERYLELARHHRVRGALLFMDLDLLKYVNDTLGHQA
GDQVLVRVAEIIQAHLRPIDIAARHGGDEFAILMPYTGREAVSVAESLLRAVQQEEFRVKGRSVTMTASIGVTFFPDHGL
TAEALVAQADMAMYRAKESGRNAVAVFDGTDEQRIEMVAKLSWDRRLREALREDRFVLYAQPILDLRLGRITRVELLLRL
VDEGGNVIAPGAFLAGAERFGLIQEIDRWVLREAIRLIAQQEPDSEIEAFEVNLSGKTISDPGLARMIQEELEASGADPS
KLVLEITETAAIGDLEQARRFITAMRRLGCRFALDDVGSGFSSLRLLKQLPVDYLKIDGAFIRNLPTEDADKHLVRAMVA
MARTQGQQTIAEFVDRAETLRLVREFGVDYAQGYLVGRPGVEWLRPGAVSSGRTTAPGGAGSGSGKPGAAQ

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=545, Percent_Identity=30.2752293577982, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI1788381, Length=538, Percent_Identity=28.6245353159851, Blast_Score=184, Evalue=2e-47,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=34.0163934426229, Blast_Score=163, Evalue=4e-41,
Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=27.4418604651163, Blast_Score=155, Evalue=8e-39,
Organism=Escherichia coli, GI226510982, Length=408, Percent_Identity=29.4117647058824, Blast_Score=150, Evalue=4e-37,
Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=31.9327731092437, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI87082096, Length=233, Percent_Identity=33.4763948497854, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=30.0429184549356, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=29.5546558704453, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=27.2357723577236, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI87081881, Length=301, Percent_Identity=29.5681063122924, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=34.1040462427746, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI87082007, Length=182, Percent_Identity=36.2637362637363, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1787262, Length=174, Percent_Identity=35.632183908046, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=29.0983606557377, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1789650, Length=422, Percent_Identity=23.696682464455, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=28.1512605042017, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1787055, Length=257, Percent_Identity=26.4591439688716, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=32.5153374233129, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=38.5093167701863, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=32.5443786982249, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=32.5301204819277, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=32.1428571428571, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=97, Percent_Identity=40.2061855670103, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787056, Length=173, Percent_Identity=32.9479768786127, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=30, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 77584; Mature: 77453

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVGAREERQVPCAEARRLTRAAAGAQLLQGALILFAPAYAAALLQGFAEPLRVVVGLS
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFLSSALLLWLERPTLSVFQRRILVAVASLPAALCTAMAVWVRWWLGALFFGGINLSLLA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ARGILQPAKQPSAQWLQAVVAMAPSALIATDREQRIVLFNRRSEEIFGYTKQEVLGKPIR
HHHHHCCCCCCHHHHHHHHHHHCCCHHEECCCCCEEEEEECCCHHHHCCCHHHHHCCCHH
ALLPELPGPAPGEGKGLNGAGPGANGLRSGGHPATQGHELVAHHKDGSSFPVEVSVAVTR
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEE
AGADELRVLEVRNISGRRRVQAALKRLASQDALTGLYNRRAFQAELERYLELARHHRVRG
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFMDLDLLKYVNDTLGHQAGDQVLVRVAEIIQAHLRPIDIAARHGGDEFAILMPYTGR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHEEECCCCCCEEEEECCCCH
EAVSVAESLLRAVQQEEFRVKGRSVTMTASIGVTFFPDHGLTAEALVAQADMAMYRAKES
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHC
GRNAVAVFDGTDEQRIEMVAKLSWDRRLREALREDRFVLYAQPILDLRLGRITRVELLLR
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHCHHHHHHHHHH
LVDEGGNVIAPGAFLAGAERFGLIQEIDRWVLREAIRLIAQQEPDSEIEAFEVNLSGKTI
HHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
SDPGLARMIQEELEASGADPSKLVLEITETAAIGDLEQARRFITAMRRLGCRFALDDVGS
CCHHHHHHHHHHHHHCCCCHHHEEEEEHHHHHHCCHHHHHHHHHHHHHHCCEEEHHHHCC
GFSSLRLLKQLPVDYLKIDGAFIRNLPTEDADKHLVRAMVAMARTQGQQTIAEFVDRAET
CHHHHHHHHHCCHHHEEECCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LRLVREFGVDYAQGYLVGRPGVEWLRPGAVSSGRTTAPGGAGSGSGKPGAAQ
HHHHHHHCCHHHCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLVGAREERQVPCAEARRLTRAAAGAQLLQGALILFAPAYAAALLQGFAEPLRVVVGLS
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFLSSALLLWLERPTLSVFQRRILVAVASLPAALCTAMAVWVRWWLGALFFGGINLSLLA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ARGILQPAKQPSAQWLQAVVAMAPSALIATDREQRIVLFNRRSEEIFGYTKQEVLGKPIR
HHHHHCCCCCCHHHHHHHHHHHCCCHHEECCCCCEEEEEECCCHHHHCCCHHHHHCCCHH
ALLPELPGPAPGEGKGLNGAGPGANGLRSGGHPATQGHELVAHHKDGSSFPVEVSVAVTR
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEE
AGADELRVLEVRNISGRRRVQAALKRLASQDALTGLYNRRAFQAELERYLELARHHRVRG
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFMDLDLLKYVNDTLGHQAGDQVLVRVAEIIQAHLRPIDIAARHGGDEFAILMPYTGR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHEEECCCCCCEEEEECCCCH
EAVSVAESLLRAVQQEEFRVKGRSVTMTASIGVTFFPDHGLTAEALVAQADMAMYRAKES
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHC
GRNAVAVFDGTDEQRIEMVAKLSWDRRLREALREDRFVLYAQPILDLRLGRITRVELLLR
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHCHHHHHHHHHH
LVDEGGNVIAPGAFLAGAERFGLIQEIDRWVLREAIRLIAQQEPDSEIEAFEVNLSGKTI
HHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
SDPGLARMIQEELEASGADPSKLVLEITETAAIGDLEQARRFITAMRRLGCRFALDDVGS
CCHHHHHHHHHHHHHCCCCHHHEEEEEHHHHHHCCHHHHHHHHHHHHHHCCEEEHHHHCC
GFSSLRLLKQLPVDYLKIDGAFIRNLPTEDADKHLVRAMVAMARTQGQQTIAEFVDRAET
CHHHHHHHHHCCHHHEEECCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LRLVREFGVDYAQGYLVGRPGVEWLRPGAVSSGRTTAPGGAGSGSGKPGAAQ
HHHHHHHCCHHHCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]