Click here to switch to the map view.

The map label for this gene is rplY2

Identifier: 51893432

GI number: 51893432

Start: 2474945

End: 2475529

Strand: Reverse

Name: rplY2

Synonym: STH2294

Alternate gene names: 51893432

Gene position: 2475529-2474945 (Counterclockwise)

Preceding gene: 51893433

Following gene: 51893431

Centisome position: 69.42

GC content: 68.38

Gene sequence:

>585_bases
ATGCAGTTGGAGGCCACCCCCCGGGGCACCGGCTCCCGGGCAAGCAGGCGGCTGCGGCAGGCCGGGTTCGTACCTGGTAT
CATCTACGGTCCCGGCGTGGAGCCGCTGGCCGTCAGCGTGCGCTCTACGCAACTGGAGCGGCTTGTCGAACGACAGGGCC
GCGGCCACCTCATCCACGTTCAGGTGGAAGGGGAAGCCAATCCCCGGCAGGTGGTGATCAAGCAACTGCAACGGGACATC
CTGACCCAGCAGGTCACGCATGTCGACTTCCTGCAGGTTGATATGAACCGGACGATCACCCTGACGGTGCCCATCGTCGT
TGTGGGCGAGGAGCAGGCGAGGCGCCGGGGGCTGCTCATTACGCACGAGCTGGACGAGGTGGAGGTGGAGTGCCGGCCTA
CCGAGATTCCGGAGGCGGTCACCCTGGATGTGTCCGGCCTGACGGAGCCCGGCCCCGTGACCGCCGCCAGCCTGTCGGCC
CCGCCCGGGGTCAGGGTGCTGGAGGATCCGGATACGGTTGTGGTCTCCTGCACCGTGATCGGCGGGGGCGAGGAGGAGGA
GGCCTCTACCGGTCCGGCGGCGTAG

Upstream 100 bases:

>100_bases
AGGCCCCGCGGGAGGGGTATTTTATATAAGGGGTGTTCCGGTGAGGCCGGAACATCTCCCCGATCATCATCGATAGGAGG
GATCGTCGATGAACGCAGTA

Downstream 100 bases:

>100_bases
GCGTATATCCTTGTACCAGTACCGGGGCATCCCGTGGAGGGGTGCCCTTGTTCTATTGTGGCGAGTCCTCGGCCGGGGTC
GGGGGTGACCGCACACCGCT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC 2

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MQLEATPRGTGSRASRRLRQAGFVPGIIYGPGVEPLAVSVRSTQLERLVERQGRGHLIHVQVEGEANPRQVVIKQLQRDI
LTQQVTHVDFLQVDMNRTITLTVPIVVVGEEQARRRGLLITHELDEVEVECRPTEIPEAVTLDVSGLTEPGPVTAASLSA
PPGVRVLEDPDTVVVSCTVIGGGEEEEASTGPAA

Sequences:

>Translated_194_residues
MQLEATPRGTGSRASRRLRQAGFVPGIIYGPGVEPLAVSVRSTQLERLVERQGRGHLIHVQVEGEANPRQVVIKQLQRDI
LTQQVTHVDFLQVDMNRTITLTVPIVVVGEEQARRRGLLITHELDEVEVECRPTEIPEAVTLDVSGLTEPGPVTAASLSA
PPGVRVLEDPDTVVVSCTVIGGGEEEEASTGPAA
>Mature_194_residues
MQLEATPRGTGSRASRRLRQAGFVPGIIYGPGVEPLAVSVRSTQLERLVERQGRGHLIHVQVEGEANPRQVVIKQLQRDI
LTQQVTHVDFLQVDMNRTITLTVPIVVVGEEQARRRGLLITHELDEVEVECRPTEIPEAVTLDVSGLTEPGPVTAASLSA
PPGVRVLEDPDTVVVSCTVIGGGEEEEASTGPAA

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL252_SYMTH (Q67M16)

Other databases:

- EMBL:   AP006840
- RefSeq:   YP_076123.1
- ProteinModelPortal:   Q67M16
- SMR:   Q67M16
- GeneID:   2979503
- GenomeReviews:   AP006840_GR
- KEGG:   sth:STH2294
- NMPDR:   fig|292459.1.peg.2202
- HOGENOM:   HBG731986
- OMA:   ELIMKKG
- ProtClustDB:   PRK05618
- BioCyc:   STHE292459:STH2294-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 20874; Mature: 20874

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLEATPRGTGSRASRRLRQAGFVPGIIYGPGVEPLAVSVRSTQLERLVERQGRGHLIHV
CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
QVEGEANPRQVVIKQLQRDILTQQVTHVDFLQVDMNRTITLTVPIVVVGEEQARRRGLLI
EECCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEEEEEEEEECCHHHHHCCEEE
THELDEVEVECRPTEIPEAVTLDVSGLTEPGPVTAASLSAPPGVRVLEDPDTVVVSCTVI
EECCCCEEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCEEEECCCEEEEEEEEE
GGGEEEEASTGPAA
ECCCCCCCCCCCCC
>Mature Secondary Structure
MQLEATPRGTGSRASRRLRQAGFVPGIIYGPGVEPLAVSVRSTQLERLVERQGRGHLIHV
CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
QVEGEANPRQVVIKQLQRDILTQQVTHVDFLQVDMNRTITLTVPIVVVGEEQARRRGLLI
EECCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEEEEEEEEECCHHHHHCCEEE
THELDEVEVECRPTEIPEAVTLDVSGLTEPGPVTAASLSAPPGVRVLEDPDTVVVSCTVI
EECCCCEEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCEEEECCCEEEEEEEEE
GGGEEEEASTGPAA
ECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA