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The map label for this gene is (hspc4-1 [H]

Identifier: 51892890

GI number: 51892890

Start: 1897542

End: 1897994

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: STH1752

Alternate gene names: 51892890

Gene position: 1897994-1897542 (Counterclockwise)

Preceding gene: 51892892

Following gene: 51892889

Centisome position: 53.22

GC content: 69.76

Gene sequence:

>453_bases
GTGGATCTCATTCCGTGGAATCCCCTGCGGGAGCTGGAGCGGATACGCACGCCGCTGGAGCGGTTCTTCGCCGACCCCTT
CCTCGGTCCGACGATGCCCTTCAGCGGCGGCATGGGCGCCTTCCCGGTGGAGGTGGCGGAGCAGGGAGACGACATCGTGG
TGCGGTGCGAACTGGCCGGGATCGATCCCCAGGACGTGGACGTGCGGATCACCGACCAGGGGGTGACCATCCGGGGCGAA
CGCAAGGCCGAAGAGGTGGACCGGCAGCGGGGCACGTACCGGTCGGAGCGGTTCTACGGCGCCTTCAGCCGCACCGTCTC
CTTTCCCGTCCCGGTGGACAGCGAGCGGGCCCAGGCGACGTTCCGGCACGGCCTGCTGGAGGTGCGTGCCCCCAAGCGAA
ATCCCGACGCCGGGCCGGACGGAAGGCGGCTCAACATCACGCCGCTGCAGTGA

Upstream 100 bases:

>100_bases
CGGCATCAGCCCGCGGGCCGCTGGAGATACTGACTCACGGACGGGCGCGGCAGCGGCCACGGCGGCGCGCCCGGAGTCGG
CATGCCAAGGAGGGAGGAAC

Downstream 100 bases:

>100_bases
GACATGGGGCTGGGACCAGCCCCAATCTCTTATGCCCCTCATGGGCTCCCGAACCCGCTGCCGCTGAGCCGGCGTCAGAC
CATAACGAGGAGACGCCCGG

Product: small heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MDLIPWNPLRELERIRTPLERFFADPFLGPTMPFSGGMGAFPVEVAEQGDDIVVRCELAGIDPQDVDVRITDQGVTIRGE
RKAEEVDRQRGTYRSERFYGAFSRTVSFPVPVDSERAQATFRHGLLEVRAPKRNPDAGPDGRRLNITPLQ

Sequences:

>Translated_150_residues
MDLIPWNPLRELERIRTPLERFFADPFLGPTMPFSGGMGAFPVEVAEQGDDIVVRCELAGIDPQDVDVRITDQGVTIRGE
RKAEEVDRQRGTYRSERFYGAFSRTVSFPVPVDSERAQATFRHGLLEVRAPKRNPDAGPDGRRLNITPLQ
>Mature_150_residues
MDLIPWNPLRELERIRTPLERFFADPFLGPTMPFSGGMGAFPVEVAEQGDDIVVRCELAGIDPQDVDVRITDQGVTIRGE
RKAEEVDRQRGTYRSERFYGAFSRTVSFPVPVDSERAQATFRHGLLEVRAPKRNPDAGPDGRRLNITPLQ

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 16924; Mature: 16924

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLIPWNPLRELERIRTPLERFFADPFLGPTMPFSGGMGAFPVEVAEQGDDIVVRCELAG
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
IDPQDVDVRITDQGVTIRGERKAEEVDRQRGTYRSERFYGAFSRTVSFPVPVDSERAQAT
CCCCCCEEEECCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCCHHHHHH
FRHGLLEVRAPKRNPDAGPDGRRLNITPLQ
HHHCEEEEECCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MDLIPWNPLRELERIRTPLERFFADPFLGPTMPFSGGMGAFPVEVAEQGDDIVVRCELAG
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
IDPQDVDVRITDQGVTIRGERKAEEVDRQRGTYRSERFYGAFSRTVSFPVPVDSERAQAT
CCCCCCEEEECCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCCHHHHHH
FRHGLLEVRAPKRNPDAGPDGRRLNITPLQ
HHHCEEEEECCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA