| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is yfiZ [H]
Identifier: 51892423
GI number: 51892423
Start: 1423960
End: 1424973
Strand: Reverse
Name: yfiZ [H]
Synonym: STH1285
Alternate gene names: 51892423
Gene position: 1424973-1423960 (Counterclockwise)
Preceding gene: 51892424
Following gene: 51892422
Centisome position: 39.96
GC content: 71.99
Gene sequence:
>1014_bases ATGTCATCCCGTAACCCGGCGAAGGTCCATCGGCCGGCAGCCCTGCTGCTGCTGGCCGGCGTCCTTGTCCTCGTGGCGCT GTTGAGCCTGCGGGTGGGCTCGATCCCGGTCTCCACCGCCGACGCGGTGGCCGCGCTCACCCGCTACGACCCTGACAATT ACAGCCAGCTCGTGGTGCGCACCATGCGCCTGCCGCGCACCGTGATCGGCCTGGGGGTGGGCGCCGCGCTGGCCGCAGCC GGGGCGGCCATGCAGGCCGCCACCCGGAACCCGCTGGCGGAGCCCTCCCTGCTGGGCGTGAACGCCGGCGCGTCCTTCGC GATCGTCGCCGCCGTCTACTTCGGCCACATGACCCACCCGCTCCAGTATCTCTGGTTCGCCTTCGCCGGCGCCCTGGGCG CCGCGGTGCTGGTCTACGCCATCGCCTCGGCCGGGGGCGGGGCATCGCCGGTGAAGCTGGCGCTGGCAGGCGTCATCGTC AGCGCCCTCCTGGGCTCGTGGACCACCGCGCTGCTGATCCTGAACAAGGAGACGCTGGAGATGGTGCGCTTCTGGCTGGC CGGCTCACTGGCCGGCCGCAGCCTGAACCTGCTCCCGCCGGTCGCCCCCTTCCTGGCGGCGGGGCTCCTGGGCGTCCTCC TGGTAGGACGGCAGCTGAACACCCTCAGCCTCGGCGAGGAAACGGCCCGGTCGCTGGGGATGCACACGGGGCGCATGCGG GCGCTGGTCGCCGTCCTGGTGATGCTGCTGGCCGGATCGGCGGTGGCGCTGGCGGGTCCCGTCGGTTTCGTGGGGCTTGC GGTGCCCCACATCGTCCGGGCGTGGATCGGCGCCGATTACCGCTGGATCCTCCCCTTCTGCCTGGTCCTGGGTCCGGCAC TGCTCCTGGGTGCGGACATCCTCGGCCGGGTGATGATGCGTCCGGCGGAGGTACAGGTCGGCGTCGTGACGGCCTTGGTA GGCGCCCCTTTCCTGATCTACTTGGCGCGGCGCCGGCAGGTGGCGGAGCCATGA
Upstream 100 bases:
>100_bases GGGCAGGTCTACCCGTGGGTGGCCGTTCCCCCGTACAGCTGGGACGGTCTGGCGACCATCCTGGAGGACGTGGCGGCGGC GGTGCGCGAGGCGGATCCGC
Downstream 100 bases:
>100_bases GCGCCCGTCGCCTTCGCCTCGTACAGGCCGGCCCCTTCGCCTTCCGGGTCGATCCGGGGATGGTCGCCCGCGTGGCCGGG GCCTGGCTGGCGCTGCTGGC
Product: iron ABC transporter permease protein
Products: ADP; phosphate; ferric enterobactin [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MSSRNPAKVHRPAALLLLAGVLVLVALLSLRVGSIPVSTADAVAALTRYDPDNYSQLVVRTMRLPRTVIGLGVGAALAAA GAAMQAATRNPLAEPSLLGVNAGASFAIVAAVYFGHMTHPLQYLWFAFAGALGAAVLVYAIASAGGGASPVKLALAGVIV SALLGSWTTALLILNKETLEMVRFWLAGSLAGRSLNLLPPVAPFLAAGLLGVLLVGRQLNTLSLGEETARSLGMHTGRMR ALVAVLVMLLAGSAVALAGPVGFVGLAVPHIVRAWIGADYRWILPFCLVLGPALLLGADILGRVMMRPAEVQVGVVTALV GAPFLIYLARRRQVAEP
Sequences:
>Translated_337_residues MSSRNPAKVHRPAALLLLAGVLVLVALLSLRVGSIPVSTADAVAALTRYDPDNYSQLVVRTMRLPRTVIGLGVGAALAAA GAAMQAATRNPLAEPSLLGVNAGASFAIVAAVYFGHMTHPLQYLWFAFAGALGAAVLVYAIASAGGGASPVKLALAGVIV SALLGSWTTALLILNKETLEMVRFWLAGSLAGRSLNLLPPVAPFLAAGLLGVLLVGRQLNTLSLGEETARSLGMHTGRMR ALVAVLVMLLAGSAVALAGPVGFVGLAVPHIVRAWIGADYRWILPFCLVLGPALLLGADILGRVMMRPAEVQVGVVTALV GAPFLIYLARRRQVAEP >Mature_336_residues SSRNPAKVHRPAALLLLAGVLVLVALLSLRVGSIPVSTADAVAALTRYDPDNYSQLVVRTMRLPRTVIGLGVGAALAAAG AAMQAATRNPLAEPSLLGVNAGASFAIVAAVYFGHMTHPLQYLWFAFAGALGAAVLVYAIASAGGGASPVKLALAGVIVS ALLGSWTTALLILNKETLEMVRFWLAGSLAGRSLNLLPPVAPFLAAGLLGVLLVGRQLNTLSLGEETARSLGMHTGRMRA LVAVLVMLLAGSAVALAGPVGFVGLAVPHIVRAWIGADYRWILPFCLVLGPALLLGADILGRVMMRPAEVQVGVVTALVG APFLIYLARRRQVAEP
Specific function: Part of the ABC transporter complex yfiYZ/yfhA/yusV involved in import of the iron-hydroxamate siderophores schizokinen, arthrobactin and corprogen (Probable) [H]
COG id: COG0609
COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786805, Length=278, Percent_Identity=50.7194244604317, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1790741, Length=316, Percent_Identity=37.9746835443038, Blast_Score=163, Evalue=1e-41, Organism=Escherichia coli, GI1790740, Length=313, Percent_Identity=37.3801916932907, Blast_Score=153, Evalue=2e-38, Organism=Escherichia coli, GI1788004, Length=279, Percent_Identity=39.7849462365591, Blast_Score=125, Evalue=5e-30, Organism=Escherichia coli, GI1786804, Length=315, Percent_Identity=35.2380952380952, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1786347, Length=285, Percent_Identity=32.6315789473684, Blast_Score=108, Evalue=7e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000522 [H]
Pfam domain/function: PF01032 FecCD [H]
EC number: NA
Molecular weight: Translated: 34789; Mature: 34658
Theoretical pI: Translated: 11.28; Mature: 11.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRNPAKVHRPAALLLLAGVLVLVALLSLRVGSIPVSTADAVAALTRYDPDNYSQLVVR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHH TMRLPRTVIGLGVGAALAAAGAAMQAATRNPLAEPSLLGVNAGASFAIVAAVYFGHMTHP HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH LQYLWFAFAGALGAAVLVYAIASAGGGASPVKLALAGVIVSALLGSWTTALLILNKETLE HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECHHHHH MVRFWLAGSLAGRSLNLLPPVAPFLAAGLLGVLLVGRQLNTLSLGEETARSLGMHTGRMR HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCCHHHHH ALVAVLVMLLAGSAVALAGPVGFVGLAVPHIVRAWIGADYRWILPFCLVLGPALLLGADI HHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LGRVMMRPAEVQVGVVTALVGAPFLIYLARRRQVAEP HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SSRNPAKVHRPAALLLLAGVLVLVALLSLRVGSIPVSTADAVAALTRYDPDNYSQLVVR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHH TMRLPRTVIGLGVGAALAAAGAAMQAATRNPLAEPSLLGVNAGASFAIVAAVYFGHMTHP HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH LQYLWFAFAGALGAAVLVYAIASAGGGASPVKLALAGVIVSALLGSWTTALLILNKETLE HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECHHHHH MVRFWLAGSLAGRSLNLLPPVAPFLAAGLLGVLLVGRQLNTLSLGEETARSLGMHTGRMR HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCCHHHHH ALVAVLVMLLAGSAVALAGPVGFVGLAVPHIVRAWIGADYRWILPFCLVLGPALLLGADI HHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LGRVMMRPAEVQVGVVTALVGAPFLIYLARRRQVAEP HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; ferric enterobactin [Periplasm]; H2O [C]
Specific reaction: ATP + ferric enterobactin [Periplasm] + H2O = ADP + phosphate + ferric enterobactin [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]