| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is yfhA [H]
Identifier: 51892422
GI number: 51892422
Start: 1422932
End: 1423963
Strand: Reverse
Name: yfhA [H]
Synonym: STH1284
Alternate gene names: 51892422
Gene position: 1423963-1422932 (Counterclockwise)
Preceding gene: 51892423
Following gene: 51892421
Centisome position: 39.93
GC content: 73.35
Gene sequence:
>1032_bases ATGAGCGCCCGTCGCCTTCGCCTCGTACAGGCCGGCCCCTTCGCCTTCCGGGTCGATCCGGGGATGGTCGCCCGCGTGGC CGGGGCCTGGCTGGCGCTGCTGGCCCTGGGCGCCTGGGGCCTCACCCTGGGCAGCTACCGCCTCCCCGTGATCGATGTGG TCCGTTCGCTGCTGGGCGCCGGAACCGCCGATACCCAGTTCATCGTGATGACCCTCCGGCTCCCCCGGGTACTGGCCGCC ATGCTGGTGGGGCCCGCCCTGGCCATGTCCGGTGCGATCTTCCAGGGCCTCCTCCGCAACCCGCTGGTCTCGCCGGACGT GATCGGCGTCAACGCAGGAGCCTCGGTGGCAGCCGTTTACTGGATCGTGACCCACCGCCCCCCCGCCCTCTTGCCCCTGA TCGCCTTCGCTGGGGCGCTGGCCGCCGCGGCCTTCGTCTACCTGCTCACCTGGCGCGGCCACATCTCGGGGGCCCGGCTG ATCCTGGTGGGCATCGGCGCCAACGCCCTGCTGACGGCGGCCACCACGGCGATCTTCCTGCGGGCGGACGTCTACGAGGC GGCCTCGGCCTACCGGTGGATGACCGGCAGCCTGGCCGGCAGCGACTGGTCGGACGTGATCACCCTGGCCGTGGCCCTTG CGGTGCTGGTTCCCCCGGGGCTCGTGCTGATGTGGCCCCTGCGGGCGCTGCAGTACGGCGACCTGACGGCCCGGAGCCTG GGGCTGCCCGTGGAGGGGGTGCGCCTGGCCCTGATGGCGGTGGGATGCGGCCTGAGCGCCGCCGCCGTGTCGGTGGCGGG GCCGGTGGGCTTCGTGGCCTTCATGGTGCCCCACCTGGCCCGCATGCTGGCGGGACCGCCGGGCGGCGGCCTGTTCCTGT TCACCGGCGCCCTGGGCGGCCTGCTGCTCTTGGGCGCGGACCTGGTGGGGCAGCACGCGCTGCCGGTGAGCCTGCCGGTG GGCGTCATCACCGCCGCGCTGGGCGCCCCGTACTTCCTGTTCCTCCTCTATCGCACCAACGCACGGATGTAG
Upstream 100 bases:
>100_bases TGATGATGCGTCCGGCGGAGGTACAGGTCGGCGTCGTGACGGCCTTGGTAGGCGCCCCTTTCCTGATCTACTTGGCGCGG CGCCGGCAGGTGGCGGAGCC
Downstream 100 bases:
>100_bases GTGACCGGATATGAGCCGTCTGACCGCCGAACAGGTGACCCTCGCCTACGGATCCCACCCCGTGATCACCGGCCTGAGCC TGTGCATCCCGGACGGCGCC
Product: iron ABC transporter permease protein
Products: ADP; phosphate; ferric enterobactin [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MSARRLRLVQAGPFAFRVDPGMVARVAGAWLALLALGAWGLTLGSYRLPVIDVVRSLLGAGTADTQFIVMTLRLPRVLAA MLVGPALAMSGAIFQGLLRNPLVSPDVIGVNAGASVAAVYWIVTHRPPALLPLIAFAGALAAAAFVYLLTWRGHISGARL ILVGIGANALLTAATTAIFLRADVYEAASAYRWMTGSLAGSDWSDVITLAVALAVLVPPGLVLMWPLRALQYGDLTARSL GLPVEGVRLALMAVGCGLSAAAVSVAGPVGFVAFMVPHLARMLAGPPGGGLFLFTGALGGLLLLGADLVGQHALPVSLPV GVITAALGAPYFLFLLYRTNARM
Sequences:
>Translated_343_residues MSARRLRLVQAGPFAFRVDPGMVARVAGAWLALLALGAWGLTLGSYRLPVIDVVRSLLGAGTADTQFIVMTLRLPRVLAA MLVGPALAMSGAIFQGLLRNPLVSPDVIGVNAGASVAAVYWIVTHRPPALLPLIAFAGALAAAAFVYLLTWRGHISGARL ILVGIGANALLTAATTAIFLRADVYEAASAYRWMTGSLAGSDWSDVITLAVALAVLVPPGLVLMWPLRALQYGDLTARSL GLPVEGVRLALMAVGCGLSAAAVSVAGPVGFVAFMVPHLARMLAGPPGGGLFLFTGALGGLLLLGADLVGQHALPVSLPV GVITAALGAPYFLFLLYRTNARM >Mature_342_residues SARRLRLVQAGPFAFRVDPGMVARVAGAWLALLALGAWGLTLGSYRLPVIDVVRSLLGAGTADTQFIVMTLRLPRVLAAM LVGPALAMSGAIFQGLLRNPLVSPDVIGVNAGASVAAVYWIVTHRPPALLPLIAFAGALAAAAFVYLLTWRGHISGARLI LVGIGANALLTAATTAIFLRADVYEAASAYRWMTGSLAGSDWSDVITLAVALAVLVPPGLVLMWPLRALQYGDLTARSLG LPVEGVRLALMAVGCGLSAAAVSVAGPVGFVAFMVPHLARMLAGPPGGGLFLFTGALGGLLLLGADLVGQHALPVSLPVG VITAALGAPYFLFLLYRTNARM
Specific function: Part of the ABC transporter complex yfiYZ/yfhA/yusV involved in import of the iron-hydroxamate siderophores schizokinen, arthrobactin and corprogen (Probable) [H]
COG id: COG0609
COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786804, Length=307, Percent_Identity=38.7622149837134, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI1790740, Length=280, Percent_Identity=36.4285714285714, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1788004, Length=288, Percent_Identity=35.7638888888889, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1790741, Length=294, Percent_Identity=34.0136054421769, Blast_Score=114, Evalue=9e-27, Organism=Escherichia coli, GI1786805, Length=309, Percent_Identity=35.9223300970874, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786347, Length=283, Percent_Identity=31.8021201413428, Blast_Score=97, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000522 [H]
Pfam domain/function: PF01032 FecCD [H]
EC number: NA
Molecular weight: Translated: 35375; Mature: 35244
Theoretical pI: Translated: 11.08; Mature: 11.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSARRLRLVQAGPFAFRVDPGMVARVAGAWLALLALGAWGLTLGSYRLPVIDVVRSLLGA CCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC GTADTQFIVMTLRLPRVLAAMLVGPALAMSGAIFQGLLRNPLVSPDVIGVNAGASVAAVY CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEE WIVTHRPPALLPLIAFAGALAAAAFVYLLTWRGHISGARLILVGIGANALLTAATTAIFL EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHH RADVYEAASAYRWMTGSLAGSDWSDVITLAVALAVLVPPGLVLMWPLRALQYGDLTARSL HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHC GLPVEGVRLALMAVGCGLSAAAVSVAGPVGFVAFMVPHLARMLAGPPGGGLFLFTGALGG CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHH LLLLGADLVGQHALPVSLPVGVITAALGAPYFLFLLYRTNARM HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SARRLRLVQAGPFAFRVDPGMVARVAGAWLALLALGAWGLTLGSYRLPVIDVVRSLLGA CCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC GTADTQFIVMTLRLPRVLAAMLVGPALAMSGAIFQGLLRNPLVSPDVIGVNAGASVAAVY CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEE WIVTHRPPALLPLIAFAGALAAAAFVYLLTWRGHISGARLILVGIGANALLTAATTAIFL EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHH RADVYEAASAYRWMTGSLAGSDWSDVITLAVALAVLVPPGLVLMWPLRALQYGDLTARSL HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHC GLPVEGVRLALMAVGCGLSAAAVSVAGPVGFVAFMVPHLARMLAGPPGGGLFLFTGALGG CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHH LLLLGADLVGQHALPVSLPVGVITAALGAPYFLFLLYRTNARM HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; ferric enterobactin [Periplasm]; H2O [C]
Specific reaction: ATP + ferric enterobactin [Periplasm] + H2O = ADP + phosphate + ferric enterobactin [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]