Click here to switch to the map view.

The map label for this gene is ychJ [C]

Identifier: 50843464

GI number: 50843464

Start: 2189897

End: 2190274

Strand: Direct

Name: ychJ [C]

Synonym: PPA2018

Alternate gene names: 50843464

Gene position: 2189897-2190274 (Clockwise)

Preceding gene: 50843460

Following gene: 50843467

Centisome position: 85.53

GC content: 62.7

Gene sequence:

>378_bases
ATGACCTTATTGTGTCCCTGCGGATCAGGACGGAACCTCGACCAGTGCTGCGGACCAATCCTCGACGACCCGCGTCACGC
CGAAACCGCCGAAGCACTCATGCGGTCGCGCTACACCGCGAACACCCTGGGACGGTGGAATCACCTGTGGGCAACCTGGC
ACCCCCGTACCCGTCCCGATGTTGTCGATTCGCAGGGCGTGGAATGGACGGGTTTACAGATCCTTGCCACCAAGGATGGC
CAACCGGGCGACATCACGGGAATGGTGGAATTTCGCGCCTCGTACCGGGCCGGGAAGCGCCACAACGTCCTCCATGAGGT
GTCCCGTTTCCAGCGTCGCGCAGGCCGGTGGATGTATGTCGACGGGGACGTCGACTAA

Upstream 100 bases:

>100_bases
ATCCAGCGCCCGATGTGGCGCAAGCCTTCAGAATCTCGTCGGAGGGCCGGTGCCGACTGTAGTCCGCGCCGGGCGACACC
CAGCCTGGGATGCTTAAACC

Downstream 100 bases:

>100_bases
GCACTTAGTTCTTGCCAGACTCCGCCGCGGCCGAAGAGACGACGCTATCGAGCCATGTGCCGTGCGCACCGGACGTGGCA
TGACAACCACCGGGCACTGC

Product: putative preprotein translocase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MTLLCPCGSGRNLDQCCGPILDDPRHAETAEALMRSRYTANTLGRWNHLWATWHPRTRPDVVDSQGVEWTGLQILATKDG
QPGDITGMVEFRASYRAGKRHNVLHEVSRFQRRAGRWMYVDGDVD

Sequences:

>Translated_125_residues
MTLLCPCGSGRNLDQCCGPILDDPRHAETAEALMRSRYTANTLGRWNHLWATWHPRTRPDVVDSQGVEWTGLQILATKDG
QPGDITGMVEFRASYRAGKRHNVLHEVSRFQRRAGRWMYVDGDVD
>Mature_124_residues
TLLCPCGSGRNLDQCCGPILDDPRHAETAEALMRSRYTANTLGRWNHLWATWHPRTRPDVVDSQGVEWTGLQILATKDGQ
PGDITGMVEFRASYRAGKRHNVLHEVSRFQRRAGRWMYVDGDVD

Specific function: Unknown

COG id: COG3012

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0225 family [H]

Homologues:

Organism=Escherichia coli, GI1787484, Length=128, Percent_Identity=34.375, Blast_Score=78, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023006 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14209; Mature: 14078

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLCPCGSGRNLDQCCGPILDDPRHAETAEALMRSRYTANTLGRWNHLWATWHPRTRPD
CEEECCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCCCEEEEECCCCCCC
VVDSQGVEWTGLQILATKDGQPGDITGMVEFRASYRAGKRHNVLHEVSRFQRRAGRWMYV
CCCCCCCEECCEEEEEECCCCCCCEEEHEEEHHHHCCCCCCHHHHHHHHHHHHCCCEEEE
DGDVD
ECCCC
>Mature Secondary Structure 
TLLCPCGSGRNLDQCCGPILDDPRHAETAEALMRSRYTANTLGRWNHLWATWHPRTRPD
EEECCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCCCEEEEECCCCCCC
VVDSQGVEWTGLQILATKDGQPGDITGMVEFRASYRAGKRHNVLHEVSRFQRRAGRWMYV
CCCCCCCEECCEEEEEECCCCCCCEEEHEEEHHHHCCCCCCHHHHHHHHHHHHCCCEEEE
DGDVD
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]