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The map label for this gene is yubD [H]

Identifier: 50843057

GI number: 50843057

Start: 1712135

End: 1713385

Strand: Reverse

Name: yubD [H]

Synonym: PPA1586

Alternate gene names: 50843057

Gene position: 1713385-1712135 (Counterclockwise)

Preceding gene: 50843058

Following gene: 50843056

Centisome position: 66.92

GC content: 61.39

Gene sequence:

>1251_bases
GTGCGCATCGAGCAGCTACCCATCGCTGACCTCACGCCAGCCGACTACAACCCGCGCAAAGACCTCCGGCCCGGCGACCC
CGACTACGAAAAGCTCAAGCGGTCGCTGACGGAGTTCGGATACGTCGAACCTGTCATCTGGAACAAGACCACCGGCCATG
TCGTCGGCGGCCACCAGCGCCTCAAAGTCCTCGAAGACCTCGGTGAAACCACTGTCGACTGCGTGGTCGTCGAGTTGGAC
GAGACCCGCGAAAAAGCCTTGAACGTCGCGCTCAACAAGATCAGTGGCGACTGGGACCAGGACAAGCTCGCCCTGCTCAT
CGCCGACCTGGACGCGAGTGATTTCGACGCTGAGCTGACTGGGTTCGACGACGATGAGATTGCCCAGCTCATCGGCTCCT
TGGATGAGGACGAGGTGGAGGATGACGACTTCGATCTGACCGCCGCCCTGGAGGCTGCCGCGTTCGTCGAGCGGGGTGAT
ATCTGGACGGTGGGTAGGCATCGGCTGGTGTGCGGCGACGCCACCAACGCGGGCGACATCGAGCTGTTGATGGATGGCAA
GAAGGCCAACTTGGTGCTCACGGACCCGCCATACAACGTCGCCTTCGAATCGTCTGACGGCTTGTCGATCAAGAACGACA
AGATGAGCGCGGACGGGTTCTACGAGTTCCTGCTCGCAGCGTTCACTCAGATGGCGGGCGTGTGTGAGAAGGGCGCGTCC
GCGTACGTGTTCCACGCCGATACCGAAGGTCTGAACTTCCGGCGCGCCTTTCAAGACGCGGGCTTCAAGCTGTCGGGGTG
TTGCATCTGGGTCAAGGACTCCCTGGTGCTGGGTCGTTCCCCGTATCAGTGGCAACACGAGCCCGTTCTCTACGGCTGGG
TGAAGACGGGCAAGCACACGTGGTACGCGGATCGGAAACAAACCACCGTCTGGCGGTTTGATAAGCCTCGCAGGAATGCT
GATCATCCGACCTCGAAGCCGCTGGATCTGTTGGCGTATCCGATTGGAAACTCCACCCAGGCGAATGCGATCGTGCTCGA
CACGTTCGCCGGCTCTGGCTCCACGCTCATGGCGTGTGAGGCCACCAACCGGATCGCTTACTGCATGGAGCTCGACGAGA
AATACGCCTCAGTCATTCTGCGCCGCTACGCCGACGCCACCGGGGACGCCGCAGGTATCACCTGCCTGCGCGACGGCCAA
CAGTTGGCCTACCTGGATGTGGTGAAGGCCGTGGATCGAGGCAAGAAATAG

Upstream 100 bases:

>100_bases
TACCGGGATCTCGCGGTCTACGGGCACATGGGCCGGGATTGGCCGCGCTGGGAACAAACCTGGCGTTTTGAGCGCGACCT
GCGGAAGGCGGTGGAGCCCC

Downstream 100 bases:

>100_bases
GTGGCCGTCCGGACTTGCTATCTGGTCGGGATAGAGCGTGTATGTACATGACCGAAAACCACTCCGACCAGGGGAACACG
CAAAGGAGGCCGGTCATGAC

Product: ParB family DNA methylase

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MRIEQLPIADLTPADYNPRKDLRPGDPDYEKLKRSLTEFGYVEPVIWNKTTGHVVGGHQRLKVLEDLGETTVDCVVVELD
ETREKALNVALNKISGDWDQDKLALLIADLDASDFDAELTGFDDDEIAQLIGSLDEDEVEDDDFDLTAALEAAAFVERGD
IWTVGRHRLVCGDATNAGDIELLMDGKKANLVLTDPPYNVAFESSDGLSIKNDKMSADGFYEFLLAAFTQMAGVCEKGAS
AYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKDSLVLGRSPYQWQHEPVLYGWVKTGKHTWYADRKQTTVWRFDKPRRNA
DHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACEATNRIAYCMELDEKYASVILRRYADATGDAAGITCLRDGQ
QLAYLDVVKAVDRGKK

Sequences:

>Translated_416_residues
MRIEQLPIADLTPADYNPRKDLRPGDPDYEKLKRSLTEFGYVEPVIWNKTTGHVVGGHQRLKVLEDLGETTVDCVVVELD
ETREKALNVALNKISGDWDQDKLALLIADLDASDFDAELTGFDDDEIAQLIGSLDEDEVEDDDFDLTAALEAAAFVERGD
IWTVGRHRLVCGDATNAGDIELLMDGKKANLVLTDPPYNVAFESSDGLSIKNDKMSADGFYEFLLAAFTQMAGVCEKGAS
AYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKDSLVLGRSPYQWQHEPVLYGWVKTGKHTWYADRKQTTVWRFDKPRRNA
DHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACEATNRIAYCMELDEKYASVILRRYADATGDAAGITCLRDGQ
QLAYLDVVKAVDRGKK
>Mature_416_residues
MRIEQLPIADLTPADYNPRKDLRPGDPDYEKLKRSLTEFGYVEPVIWNKTTGHVVGGHQRLKVLEDLGETTVDCVVVELD
ETREKALNVALNKISGDWDQDKLALLIADLDASDFDAELTGFDDDEIAQLIGSLDEDEVEDDDFDLTAALEAAAFVERGD
IWTVGRHRLVCGDATNAGDIELLMDGKKANLVLTDPPYNVAFESSDGLSIKNDKMSADGFYEFLLAAFTQMAGVCEKGAS
AYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKDSLVLGRSPYQWQHEPVLYGWVKTGKHTWYADRKQTTVWRFDKPRRNA
DHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACEATNRIAYCMELDEKYASVILRRYADATGDAAGITCLRDGQ
QLAYLDVVKAVDRGKK

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 46116; Mature: 46116

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIEQLPIADLTPADYNPRKDLRPGDPDYEKLKRSLTEFGYVEPVIWNKTTGHVVGGHQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCEECCHHH
LKVLEDLGETTVDCVVVELDETREKALNVALNKISGDWDQDKLALLIADLDASDFDAELT
HHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEC
GFDDDEIAQLIGSLDEDEVEDDDFDLTAALEAAAFVERGDIWTVGRHRLVCGDATNAGDI
CCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCE
ELLMDGKKANLVLTDPPYNVAFESSDGLSIKNDKMSADGFYEFLLAAFTQMAGVCEKGAS
EEEECCCCCCEEEECCCCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC
AYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKDSLVLGRSPYQWQHEPVLYGWVKTGKHT
EEEEECCCCCCCHHHHHHHCCCEEEEEEEEEECCEEECCCCCCCCCCCEEEEEEECCCEE
WYADRKQTTVWRFDKPRRNADHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACE
EECCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCEEEEEE
ATNRIAYCMELDEKYASVILRRYADATGDAAGITCLRDGQQLAYLDVVKAVDRGKK
CCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIEQLPIADLTPADYNPRKDLRPGDPDYEKLKRSLTEFGYVEPVIWNKTTGHVVGGHQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCEECCHHH
LKVLEDLGETTVDCVVVELDETREKALNVALNKISGDWDQDKLALLIADLDASDFDAELT
HHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEC
GFDDDEIAQLIGSLDEDEVEDDDFDLTAALEAAAFVERGDIWTVGRHRLVCGDATNAGDI
CCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCE
ELLMDGKKANLVLTDPPYNVAFESSDGLSIKNDKMSADGFYEFLLAAFTQMAGVCEKGAS
EEEECCCCCCEEEECCCCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC
AYVFHADTEGLNFRRAFQDAGFKLSGCCIWVKDSLVLGRSPYQWQHEPVLYGWVKTGKHT
EEEEECCCCCCCHHHHHHHCCCEEEEEEEEEECCEEECCCCCCCCCCCEEEEEEECCCEE
WYADRKQTTVWRFDKPRRNADHPTSKPLDLLAYPIGNSTQANAIVLDTFAGSGSTLMACE
EECCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCEEEEEE
ATNRIAYCMELDEKYASVILRRYADATGDAAGITCLRDGQQLAYLDVVKAVDRGKK
CCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10366527 [H]