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The map label for this gene is rpoZ

Identifier: 50842671

GI number: 50842671

Start: 1296934

End: 1297281

Strand: Direct

Name: rpoZ

Synonym: PPA1191

Alternate gene names: 50842671

Gene position: 1296934-1297281 (Clockwise)

Preceding gene: 50842670

Following gene: 50842672

Centisome position: 50.66

GC content: 62.93

Gene sequence:

>348_bases
TTGACTGAGACCACCCCTGAAGGCATCGTCAACCCGCCCATTGACCAGCTCCTCGAGCACGTCGACTCGAAGTACCGCCT
CGTCCTCTTCGCGGCGAAGCGCGCCCGTCAGATCAATGCGTACTACTCGCAGCTGGCGGAAGGCCTACTGGAGAATGTCG
GCCCACTGGTGGAAACCACCAACCAGGAGAAGCCACTATCTATCGCCATGCGTGAGATCCAGGCCGGCGTCGTCGAAGCC
CACGAGATGGATGCCGAGGAGATCGCCGCCCAGGCCGCTGCGGCCCAAGAGGCCCCGGCTATTGAGCTGGATGACCCCTT
CGCTGACCTCGCTGATCCGAACGCCTGA

Upstream 100 bases:

>100_bases
CGGATGAATTTGACGCCGTTGTCGTCAACGACACCGTAGATCACGCAGTTGCGCATCTGGTAGAATTACTAAGTCTGTGA
CCATATCTGGAGGACATTCC

Downstream 100 bases:

>100_bases
TCTGAGACCGGCGTGAGTGTCGTCGTTCTTGGTGTCGGGGGAGGGATCGCCGCCTACAAGGCATGCCTGCTCGCGCGGCT
CCTCTCTGAGGTCGGCCACG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MTETTPEGIVNPPIDQLLEHVDSKYRLVLFAAKRARQINAYYSQLAEGLLENVGPLVETTNQEKPLSIAMREIQAGVVEA
HEMDAEEIAAQAAAAQEAPAIELDDPFADLADPNA

Sequences:

>Translated_115_residues
MTETTPEGIVNPPIDQLLEHVDSKYRLVLFAAKRARQINAYYSQLAEGLLENVGPLVETTNQEKPLSIAMREIQAGVVEA
HEMDAEEIAAQAAAAQEAPAIELDDPFADLADPNA
>Mature_114_residues
TETTPEGIVNPPIDQLLEHVDSKYRLVLFAAKRARQINAYYSQLAEGLLENVGPLVETTNQEKPLSIAMREIQAGVVEAH
EMDAEEIAAQAAAAQEAPAIELDDPFADLADPNA

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_PROAC (Q6A8H5)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_055898.1
- ProteinModelPortal:   Q6A8H5
- SMR:   Q6A8H5
- GeneID:   2931174
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1191
- NMPDR:   fig|267747.1.peg.1175
- HOGENOM:   HBG742204
- OMA:   VEAHEMD
- ProtClustDB:   PRK00392
- BioCyc:   PACN267747:PPA1191-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 12484; Mature: 12353

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETTPEGIVNPPIDQLLEHVDSKYRLVLFAAKRARQINAYYSQLAEGLLENVGPLVETT
CCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC
NQEKPLSIAMREIQAGVVEAHEMDAEEIAAQAAAAQEAPAIELDDPFADLADPNA
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TETTPEGIVNPPIDQLLEHVDSKYRLVLFAAKRARQINAYYSQLAEGLLENVGPLVETT
CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC
NQEKPLSIAMREIQAGVVEAHEMDAEEIAAQAAAAQEAPAIELDDPFADLADPNA
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA