Click here to switch to the map view.

The map label for this gene is ybgL [C]

Identifier: 50841771

GI number: 50841771

Start: 332153

End: 332923

Strand: Direct

Name: ybgL [C]

Synonym: PPA0282

Alternate gene names: 50841771

Gene position: 332153-332923 (Clockwise)

Preceding gene: 50841767

Following gene: 50841772

Centisome position: 12.97

GC content: 60.57

Gene sequence:

>771_bases
ATGGCAACTGTTGATCTCAACGCGGACATGGGGGAATCTTTCGGATCGTGGAAGGCAGGTGACGATGAGTCCCTGCTGGG
AATTGTCACCTCCGCAAATGTGGCCTGCGGATTCCATGCTGGTGACGCCGTCGTCATGGGCCAGACTTGTAAGGCTGCTG
CGGAACACGGGGTGTGCATCGGCGCCCACGTGTCTTACCGGGACCTCGCCGGGTTTGGTCGCAACTTCATCGACGTTGAC
CCTGGACGGTTGCGCGATGAGGTCATTTACCAGTTGTCGGCACTGCGTGGAATTGCTGCAGTCCATGGCGCCTCGGTGCG
CTACGTCAAGCCTCACGGCGCCCTGTACAACACGATCGTTCACCACCAGGCTCAGGCCAAGGCAGTCGTCGAGGCGATTG
ACGCTGTCAACTCCGCCACGGGTGCCGATATGGCCATTTTAGGCTTGCCGGGAGCTCTTGTCCTTGACCTCGCTGAGCAG
CAGGGCGTCCGTACTCTGAGTGAGGTGTTCGCCGATCGGGCTTACAACCCCGATGGCACCTTGGTATCACGTCGCCAGGA
GGGGTCAGTGTTGCATGATCCGGGCGAGGTCGCTGAGCGCGTTGTGACGCTGGTGACTCAGGGATCGGTAACGGCTATCG
ACGGCACCAAGGTACCGATTAAGGCAGATTCGGTGTGTGTTCATGGTGACACCCCGGGAGCTGTTGCGATGGCTACGGCA
GTGCGTGATCGCCTTGCCTCCACCGGGATCGAACTGCGGGCTGCCGCATGA

Upstream 100 bases:

>100_bases
GGGTGTTGTGGCGTCACTTTAGAAGCGATCGGACCGCCTGAAGGTGTCTCTACCCAGAAAACGTGTTGACCGGGAGGGAT
CTCGGCGCCACCCTTATGTC

Downstream 100 bases:

>100_bases
GGTTGTTGCCGGCTGGACGGACGGCAGTGCTCGTCGAATTGGATGATGCCGGTCAGCGTCGTCGCCTGCATCGGACTTTG
AGTGAGCATCCGGCGGTGGG

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MATVDLNADMGESFGSWKAGDDESLLGIVTSANVACGFHAGDAVVMGQTCKAAAEHGVCIGAHVSYRDLAGFGRNFIDVD
PGRLRDEVIYQLSALRGIAAVHGASVRYVKPHGALYNTIVHHQAQAKAVVEAIDAVNSATGADMAILGLPGALVLDLAEQ
QGVRTLSEVFADRAYNPDGTLVSRRQEGSVLHDPGEVAERVVTLVTQGSVTAIDGTKVPIKADSVCVHGDTPGAVAMATA
VRDRLASTGIELRAAA

Sequences:

>Translated_256_residues
MATVDLNADMGESFGSWKAGDDESLLGIVTSANVACGFHAGDAVVMGQTCKAAAEHGVCIGAHVSYRDLAGFGRNFIDVD
PGRLRDEVIYQLSALRGIAAVHGASVRYVKPHGALYNTIVHHQAQAKAVVEAIDAVNSATGADMAILGLPGALVLDLAEQ
QGVRTLSEVFADRAYNPDGTLVSRRQEGSVLHDPGEVAERVVTLVTQGSVTAIDGTKVPIKADSVCVHGDTPGAVAMATA
VRDRLASTGIELRAAA
>Mature_255_residues
ATVDLNADMGESFGSWKAGDDESLLGIVTSANVACGFHAGDAVVMGQTCKAAAEHGVCIGAHVSYRDLAGFGRNFIDVDP
GRLRDEVIYQLSALRGIAAVHGASVRYVKPHGALYNTIVHHQAQAKAVVEAIDAVNSATGADMAILGLPGALVLDLAEQQ
GVRTLSEVFADRAYNPDGTLVSRRQEGSVLHDPGEVAERVVTLVTQGSVTAIDGTKVPIKADSVCVHGDTPGAVAMATAV
RDRLASTGIELRAAA

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=247, Percent_Identity=39.2712550607287, Blast_Score=178, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y282_PROAC (Q6AB26)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_054998.1
- ProteinModelPortal:   Q6AB26
- SMR:   Q6AB26
- GeneID:   2932499
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA0282
- NMPDR:   fig|267747.1.peg.275
- HOGENOM:   HBG482818
- OMA:   GRRSMAC
- ProtClustDB:   PRK05406
- BioCyc:   PACN267747:PPA0282-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 26497; Mature: 26366

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVDLNADMGESFGSWKAGDDESLLGIVTSANVACGFHAGDAVVMGQTCKAAAEHGVCI
CEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCEEEECCHHHHHHHCCEEE
GAHVSYRDLAGFGRNFIDVDPGRLRDEVIYQLSALRGIAAVHGASVRYVKPHGALYNTIV
ECCCCHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
HHQAQAKAVVEAIDAVNSATGADMAILGLPGALVLDLAEQQGVRTLSEVFADRAYNPDGT
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
LVSRRQEGSVLHDPGEVAERVVTLVTQGSVTAIDGTKVPIKADSVCVHGDTPGAVAMATA
EEECCCCCCEEECHHHHHHHHHHHHCCCCEEEECCCCCCEECCCEEEECCCCCHHHHHHH
VRDRLASTGIELRAAA
HHHHHHHCCCEEEECC
>Mature Secondary Structure 
ATVDLNADMGESFGSWKAGDDESLLGIVTSANVACGFHAGDAVVMGQTCKAAAEHGVCI
EEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCEEEECCHHHHHHHCCEEE
GAHVSYRDLAGFGRNFIDVDPGRLRDEVIYQLSALRGIAAVHGASVRYVKPHGALYNTIV
ECCCCHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
HHQAQAKAVVEAIDAVNSATGADMAILGLPGALVLDLAEQQGVRTLSEVFADRAYNPDGT
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
LVSRRQEGSVLHDPGEVAERVVTLVTQGSVTAIDGTKVPIKADSVCVHGDTPGAVAMATA
EEECCCCCCEEECHHHHHHHHHHHHCCCCEEEECCCCCCEECCCEEEECCCCCHHHHHHH
VRDRLASTGIELRAAA
HHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA