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The map label for this gene is ybaV [C]

Identifier: 50086076

GI number: 50086076

Start: 2990694

End: 2991080

Strand: Reverse

Name: ybaV [C]

Synonym: ACIAD3064

Alternate gene names: 50086076

Gene position: 2991080-2990694 (Counterclockwise)

Preceding gene: 50086077

Following gene: 50086075

Centisome position: 83.12

GC content: 39.79

Gene sequence:

>387_bases
ATGTCAATACGTCATTTTTTTACATTTTTTTGGGCGACATTGCTTACACTTTTTTCTATGCAAATTGTTTTTGCACAAGG
GTTTGATCAACAATATGATGCTTGGAAAACACAGCAAAAAGCACATGATACCCGTTTAAACTCATCTGCTAGTCATCATT
CCCTGTCTAAACCGACACAGCAATCTGGCACTGGGGTGAAAGTCAATATTAACTCCGCAACGGCCAAAGAATTACAGCAG
TTGCATGGGGTGGGAGAGAAAAAAGCACTCGCCATCGTTGAATATCGTCAGCAGTATGGCAAGTTTGCGTCTGTAGATGA
TCTACAGAAAGTAAAAGGAATTGGCCCTAAATTTATAGAAAAGAACCGAGACCGTTTAGCCATTTAA

Upstream 100 bases:

>100_bases
GCAGGCGCAATTACAACATAAAGTGCTTGAAGAGATGAGTCTGCAAGAGATAGACGGGCTCTGGAATCAAGCCAAACAAC
ATCTGAATAATGGTTAATTC

Downstream 100 bases:

>100_bases
GAGGCTGAGTCATGCTCAAAATACCGAATAAAGCAGTGAGAGAATCAAATTGCCCTTTACTCAGGTTAGAGATATGATTA
GCAACATCTTATTATTAACG

Product: DNA uptake protein and/or related DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQQSGTGVKVNINSATAKELQQ
LHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRLAI

Sequences:

>Translated_128_residues
MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQQSGTGVKVNINSATAKELQQ
LHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRLAI
>Mature_127_residues
SIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQQSGTGVKVNINSATAKELQQL
HGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRLAI

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=84, Percent_Identity=41.6666666666667, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14531; Mature: 14400

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC
QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE
CCCCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
KNRDRLAI
CCCCCCCC
>Mature Secondary Structure 
SIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC
QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE
CCCCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
KNRDRLAI
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]