Click here to switch to the map view.

The map label for this gene is cmpC [H]

Identifier: 50085054

GI number: 50085054

Start: 1904816

End: 1905847

Strand: Direct

Name: cmpC [H]

Synonym: ACIAD1914

Alternate gene names: 50085054

Gene position: 1904816-1905847 (Clockwise)

Preceding gene: 50085053

Following gene: 50085055

Centisome position: 52.93

GC content: 40.31

Gene sequence:

>1032_bases
ATGAGTCAGATTGAAAAAAAACAATTGCAGCTCGGATATATTCCTCTTTTAGACTGCATTGCACTCCTTTGGGCCAAAGA
ACGTGGCTACTTTGAAGAAATGGGATTAGATGTCACATTAGTCAAAGAAGCATCTTGGGCAAGTTTAAGGGATCGCCTGG
CTTTTGGTATTTTAGATGCTGCTCACTGTCTCTCTGCAATGCTTCCTGCAGCCGCCATTGGTGAAGATCAAATTGGAATC
CCACTCAAAACACCGTTGGTACTCAGTAAAAACCGTGCCTATATCAGCTTGAGCCAGAAATTATGCTATGAGCTATCTAT
CCAAAACGCTGATAATGCCCAAGAAAATTCGGCAAAACTTGTAAAGTATCTTGAGCAAGAACAAAGCATAGCGCTTGCAC
ATGTATTTCATCATTCAATTCATCACTACTGTTTACGTGAATGGCTGGCATTAAGCCATCTAGACCTAGCTAAAGCCATT
CAATTAAAAACCTTACCCCCACCGTATATGCTTGATGCACTGGCATCTGCTTCAATTGATGGTTTTTGTGTAGGAGAACC
GTGGAATACTCAAGGTGAAATTGAAGGATATAGCCAGATTGTTGCCTCTAGTCGAGATATTATTCCTGAAGTGGCCGATA
AAGTTTTAGCTGTTACAGAAGAATGGGCAGCACATCATCCGAATACTGTGATTGCTTTAACTGCAGCCATATTAAAAGCG
CAACAAGAACTTGAAACCTTATCTAACCTTGAGCCCGTTTGGCAGATACTCATTAATTTTAATATTGTTCGCTTCCAATG
TTCCAAATCGGTTCATGTTAAGTCTTACCATGCACTCGAACAGATCATTCGACATTTGGTTGTTGGACAAGCTGCTCCCT
GTAGTGAAGATATGCTCTGGTTATTTGGACAAATGCAAAAATGGCATGATTTAACAATTGAGACAACAGCGCTTAACGAA
TTGAGTCAACGTTGTATTGATCAAAATAGTTTTGAGAAAGCCATGCAGCATGTTCAAAGTAACACGGGTTAA

Upstream 100 bases:

>100_bases
CGTAAAAATGCCATGAGTCATCGTATCACTATGGGAGAAATGGCACGGCGTTTAATTGATGCACAACAGTTACTTCTTAA
CCCGTTAAAAGAGGATTCTC

Downstream 100 bases:

>100_bases
TTTTGATACTGGGTAGTTGAATCAATCTCAGCCATTTAATTACTTGTAAGCAGTTTTGAATGTAGATTAAATATTTAATC
TACAGTCAAAACTATTTATT

Product: nitrate transport protein (NasF)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MSQIEKKQLQLGYIPLLDCIALLWAKERGYFEEMGLDVTLVKEASWASLRDRLAFGILDAAHCLSAMLPAAAIGEDQIGI
PLKTPLVLSKNRAYISLSQKLCYELSIQNADNAQENSAKLVKYLEQEQSIALAHVFHHSIHHYCLREWLALSHLDLAKAI
QLKTLPPPYMLDALASASIDGFCVGEPWNTQGEIEGYSQIVASSRDIIPEVADKVLAVTEEWAAHHPNTVIALTAAILKA
QQELETLSNLEPVWQILINFNIVRFQCSKSVHVKSYHALEQIIRHLVVGQAAPCSEDMLWLFGQMQKWHDLTIETTALNE
LSQRCIDQNSFEKAMQHVQSNTG

Sequences:

>Translated_343_residues
MSQIEKKQLQLGYIPLLDCIALLWAKERGYFEEMGLDVTLVKEASWASLRDRLAFGILDAAHCLSAMLPAAAIGEDQIGI
PLKTPLVLSKNRAYISLSQKLCYELSIQNADNAQENSAKLVKYLEQEQSIALAHVFHHSIHHYCLREWLALSHLDLAKAI
QLKTLPPPYMLDALASASIDGFCVGEPWNTQGEIEGYSQIVASSRDIIPEVADKVLAVTEEWAAHHPNTVIALTAAILKA
QQELETLSNLEPVWQILINFNIVRFQCSKSVHVKSYHALEQIIRHLVVGQAAPCSEDMLWLFGQMQKWHDLTIETTALNE
LSQRCIDQNSFEKAMQHVQSNTG
>Mature_342_residues
SQIEKKQLQLGYIPLLDCIALLWAKERGYFEEMGLDVTLVKEASWASLRDRLAFGILDAAHCLSAMLPAAAIGEDQIGIP
LKTPLVLSKNRAYISLSQKLCYELSIQNADNAQENSAKLVKYLEQEQSIALAHVFHHSIHHYCLREWLALSHLDLAKAIQ
LKTLPPPYMLDALASASIDGFCVGEPWNTQGEIEGYSQIVASSRDIIPEVADKVLAVTEEWAAHHPNTVIALTAAILKAQ
QELETLSNLEPVWQILINFNIVRFQCSKSVHVKSYHALEQIIRHLVVGQAAPCSEDMLWLFGQMQKWHDLTIETTALNEL
SQRCIDQNSFEKAMQHVQSNTG

Specific function: Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Responsible for energy coupling to the transport system [H]

COG id: COG0715

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR015168
- InterPro:   IPR005890 [H]

Pfam domain/function: PF00005 ABC_tran; PF09084 NMT1 [H]

EC number: NA

Molecular weight: Translated: 38432; Mature: 38300

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIEKKQLQLGYIPLLDCIALLWAKERGYFEEMGLDVTLVKEASWASLRDRLAFGILDA
CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCEEEECCCHHHHHHHHHHHHHHHH
AHCLSAMLPAAAIGEDQIGIPLKTPLVLSKNRAYISLSQKLCYELSIQNADNAQENSAKL
HHHHHHHCCHHHCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHCCCCCCCCCHHHHHH
VKYLEQEQSIALAHVFHHSIHHYCLREWLALSHLDLAKAIQLKTLPPPYMLDALASASID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
GFCVGEPWNTQGEIEGYSQIVASSRDIIPEVADKVLAVTEEWAAHHPNTVIALTAAILKA
CEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QQELETLSNLEPVWQILINFNIVRFQCSKSVHVKSYHALEQIIRHLVVGQAAPCSEDMLW
HHHHHHHHCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LFGQMQKWHDLTIETTALNELSQRCIDQNSFEKAMQHVQSNTG
HHHHHHHHHCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQIEKKQLQLGYIPLLDCIALLWAKERGYFEEMGLDVTLVKEASWASLRDRLAFGILDA
CCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCEEEECCCHHHHHHHHHHHHHHHH
AHCLSAMLPAAAIGEDQIGIPLKTPLVLSKNRAYISLSQKLCYELSIQNADNAQENSAKL
HHHHHHHCCHHHCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHCCCCCCCCCHHHHHH
VKYLEQEQSIALAHVFHHSIHHYCLREWLALSHLDLAKAIQLKTLPPPYMLDALASASID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
GFCVGEPWNTQGEIEGYSQIVASSRDIIPEVADKVLAVTEEWAAHHPNTVIALTAAILKA
CEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QQELETLSNLEPVWQILINFNIVRFQCSKSVHVKSYHALEQIIRHLVVGQAAPCSEDMLW
HHHHHHHHCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
LFGQMQKWHDLTIETTALNELSQRCIDQNSFEKAMQHVQSNTG
HHHHHHHHHCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]