| Definition | Acinetobacter sp. ADP1 chromosome, complete genome. |
|---|---|
| Accession | NC_005966 |
| Length | 3,598,621 |
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The map label for this gene is ydeP [H]
Identifier: 50085055
GI number: 50085055
Start: 1906023
End: 1908413
Strand: Direct
Name: ydeP [H]
Synonym: ACIAD1915
Alternate gene names: 50085055
Gene position: 1906023-1908413 (Clockwise)
Preceding gene: 50085054
Following gene: 50085056
Centisome position: 52.97
GC content: 43.54
Gene sequence:
>2391_bases ATGGACAGCCGAGAAACCACAACAGAAGATAATAATGCGAGTTATGCACGTATCGAACCCTATGATCAACCCGCAGGCGG TTGGGGTGCTTTACTCAGTGTTGCAAGAAATTTAAAACGTCAAGAAACATTTAAAAAAGGATCCATTTCATTACTTAATA TTAATCAACCCACAGGTTTTGATTGTCCTGGTTGCGCTTGGCCTGAAAAAAAAGACACCCATACCTTTAATTTCTGCGAA AACGGCGCCAAAGCCGTTGCATTTGAAGCCACCAGTAAACGTGTCACACCAGAGTTTTTTGCAACGCATACCGTAAGCTG GCTCAAAGAACAAAGTGACTTTTTTCTAGAAGATGCTGGGCGTATCACCGACCCTATGCGTTACGATGCAGCAACCGACA AATATGTTCCTATTTCATGGGATGATGCGTTTCAGTTAATTGCCAAGCATTTGCAGGCACTCGATCATCCAAACGAAGCC GCGTTTTATACCTCTGGTCGTACCAGTAACGAAGCTGCATTTTTATATCAGCTTTTTGTCAGAAATTTTGGAACAAATAA TTTTCCAGATTGCTCGAACATGTGTCACGAAGCGACCAGTGTTGGTTTGAAAGACGCTATTGGTCTTGGAAAAGGTACGG TTACACTGGATGACTTTGATCAAGCTGACGCAATTTTTAGCTTCGGTCATAACCCTGGAACCAATCATCCGCGTATGCTG GCAACCTTACGTGAAGTATCGAAACGTGGTGGAACCATTATTGCAATTAACCCGCTTAAAGAGCGTGGTTTAGAAAGATT TCAAGATCCTCAAGCCCCACTTGAAATGATGACCAATGGTAGTACACCGATCAGCCGTTATTATTTTCAACCTAAAGTAG GCGGCGACTATGCCATTATGTTTGGCATGCTCAAACATCTGGATGAATGGGATCAAATCAATCTGTCTAAAGGTAAACCA AGTGTGTTTGATCGTGATTTTATCGCGCTCAATACCGTAGGTTTTGAAGACATGCTAACCGAAATTCGTAATACTTCTTG GTCGGAGATCCATCCACATACTGGGCTTACACCCGAACATCTTGAAGCACTGTCAAAACTCTATCTCGAATCACAGCGTG CCATTTTCTGCTGGGGTATGGGAATCACCCAACATCGTCATGGCACGGTTAATGTGCACATGCTTGCTAATCTGATGCTT GCCCGTGGCCACATTGGACGTCCTGGCGCAGGTTTAGCGCCTATTCGTGGTCATAGCAATGTACAGGGTGATCGCACAAT GGGAATCAATGAGCGTCCAGGCGCCAAAATGCTGGATAGTATTGATCGCGTTTTTGGCATTCAGTCTCCACGTGAAGATG GGCTGGGTGTTGTAGAAACCATCAAAGCGATGGCTGAAGGTCAAGTAAAAGTATTTATCGGTCTAGGTGGAAATTTTGCC GTAGCTACACCTGATAGCGACTATACACAACAAGCATTACGTGCATGTAAATTAACCGTACATATCACCACAAAAATGAA CCGTAGCCACTTGGTGTGTGGTGAAGACGCCCTAATGCTCCCTTGCCTGGGTCGAACTGAAATTGATACGCAAAAACACG GCCCACAAGCGATTTCTGTTGAAGATTCGATGAGCAATGTGCATCTTTCAGCAGGACGTAACGAACCAATTTCTTCAGAT TTACTATCAGAACCCGACATTGTCGCCAGAATTGCAGAAGCAACATTACCTGATAGTCAGATCAAATGGCGCTGGTATGT TGAAAGCTATGACCGTATTCGTGATGCAATATCTGAAGTGTTTGATGAATTCCATGACTTTAATCAACGCGTCTATCAAC CTGGAGGATTTCACCTTGAGCACCCTGCCAATCAGCATGTGTGGAATACCCCTAAAGGCAAAGCCCAATTTTTAATTACA CCGATTTCAGAAGTGTATGCAGATAAAGAACATCAATTTGCAGATACTTACTCAAAAGCTAAAGTTTATACACTCATGAC TACACGCTCACATGATCAGTATAATACAACGCTATATGGTCTAGATGACCGTTATCGTGGGGTATTCGGTCAGCGCCGTG TACTCTTTATGAATGAACAGGATATTCAAGAAGCAGGCTTTCAGGCAGACCAATGGGTCGATATTGAAAGTATCTATTCC GATGGACTCAAACGTATTGTCCGTAGCTTTAAAATCGTACCGTACAATATTCCAAGGGGAAGTATGGCGGCCTATTATCC AGAAACAAACCCCTTGGTGGCTTTAAGCAGTCATGACAAATACGCAAAAATACCTGCATCCAAAAGTATTCCTGTAATCT TACATCCTGGTCAAGCGCCAGAACATTTTAATCTCGCTGCGCCCGTCGATCCTGAACATGCAAATGGATAG
Upstream 100 bases:
>100_bases TAATCTACAGTCAAAACTATTTATTCAATCTTTACAATTTTTATCATCACATCTTAATTAATCATTTTAATATCTATTTA AAAGCTATCGAGATGCACAT
Downstream 100 bases:
>100_bases TTTAACCGAAACGACAAATGCCTTGAGTAATGATACTCATGCTCAAGGCTATCAAAGCGTTTCCACTACTCGGCATGTCG GTCACATACGTGAGGTTGTG
Product: oxidoreductase molybdopterin
Products: CO2; NADH
Alternate protein names: NA
Number of amino acids: Translated: 796; Mature: 796
Protein sequence:
>796_residues MDSRETTTEDNNASYARIEPYDQPAGGWGALLSVARNLKRQETFKKGSISLLNINQPTGFDCPGCAWPEKKDTHTFNFCE NGAKAVAFEATSKRVTPEFFATHTVSWLKEQSDFFLEDAGRITDPMRYDAATDKYVPISWDDAFQLIAKHLQALDHPNEA AFYTSGRTSNEAAFLYQLFVRNFGTNNFPDCSNMCHEATSVGLKDAIGLGKGTVTLDDFDQADAIFSFGHNPGTNHPRML ATLREVSKRGGTIIAINPLKERGLERFQDPQAPLEMMTNGSTPISRYYFQPKVGGDYAIMFGMLKHLDEWDQINLSKGKP SVFDRDFIALNTVGFEDMLTEIRNTSWSEIHPHTGLTPEHLEALSKLYLESQRAIFCWGMGITQHRHGTVNVHMLANLML ARGHIGRPGAGLAPIRGHSNVQGDRTMGINERPGAKMLDSIDRVFGIQSPREDGLGVVETIKAMAEGQVKVFIGLGGNFA VATPDSDYTQQALRACKLTVHITTKMNRSHLVCGEDALMLPCLGRTEIDTQKHGPQAISVEDSMSNVHLSAGRNEPISSD LLSEPDIVARIAEATLPDSQIKWRWYVESYDRIRDAISEVFDEFHDFNQRVYQPGGFHLEHPANQHVWNTPKGKAQFLIT PISEVYADKEHQFADTYSKAKVYTLMTTRSHDQYNTTLYGLDDRYRGVFGQRRVLFMNEQDIQEAGFQADQWVDIESIYS DGLKRIVRSFKIVPYNIPRGSMAAYYPETNPLVALSSHDKYAKIPASKSIPVILHPGQAPEHFNLAAPVDPEHANG
Sequences:
>Translated_796_residues MDSRETTTEDNNASYARIEPYDQPAGGWGALLSVARNLKRQETFKKGSISLLNINQPTGFDCPGCAWPEKKDTHTFNFCE NGAKAVAFEATSKRVTPEFFATHTVSWLKEQSDFFLEDAGRITDPMRYDAATDKYVPISWDDAFQLIAKHLQALDHPNEA AFYTSGRTSNEAAFLYQLFVRNFGTNNFPDCSNMCHEATSVGLKDAIGLGKGTVTLDDFDQADAIFSFGHNPGTNHPRML ATLREVSKRGGTIIAINPLKERGLERFQDPQAPLEMMTNGSTPISRYYFQPKVGGDYAIMFGMLKHLDEWDQINLSKGKP SVFDRDFIALNTVGFEDMLTEIRNTSWSEIHPHTGLTPEHLEALSKLYLESQRAIFCWGMGITQHRHGTVNVHMLANLML ARGHIGRPGAGLAPIRGHSNVQGDRTMGINERPGAKMLDSIDRVFGIQSPREDGLGVVETIKAMAEGQVKVFIGLGGNFA VATPDSDYTQQALRACKLTVHITTKMNRSHLVCGEDALMLPCLGRTEIDTQKHGPQAISVEDSMSNVHLSAGRNEPISSD LLSEPDIVARIAEATLPDSQIKWRWYVESYDRIRDAISEVFDEFHDFNQRVYQPGGFHLEHPANQHVWNTPKGKAQFLIT PISEVYADKEHQFADTYSKAKVYTLMTTRSHDQYNTTLYGLDDRYRGVFGQRRVLFMNEQDIQEAGFQADQWVDIESIYS DGLKRIVRSFKIVPYNIPRGSMAAYYPETNPLVALSSHDKYAKIPASKSIPVILHPGQAPEHFNLAAPVDPEHANG >Mature_796_residues MDSRETTTEDNNASYARIEPYDQPAGGWGALLSVARNLKRQETFKKGSISLLNINQPTGFDCPGCAWPEKKDTHTFNFCE NGAKAVAFEATSKRVTPEFFATHTVSWLKEQSDFFLEDAGRITDPMRYDAATDKYVPISWDDAFQLIAKHLQALDHPNEA AFYTSGRTSNEAAFLYQLFVRNFGTNNFPDCSNMCHEATSVGLKDAIGLGKGTVTLDDFDQADAIFSFGHNPGTNHPRML ATLREVSKRGGTIIAINPLKERGLERFQDPQAPLEMMTNGSTPISRYYFQPKVGGDYAIMFGMLKHLDEWDQINLSKGKP SVFDRDFIALNTVGFEDMLTEIRNTSWSEIHPHTGLTPEHLEALSKLYLESQRAIFCWGMGITQHRHGTVNVHMLANLML ARGHIGRPGAGLAPIRGHSNVQGDRTMGINERPGAKMLDSIDRVFGIQSPREDGLGVVETIKAMAEGQVKVFIGLGGNFA VATPDSDYTQQALRACKLTVHITTKMNRSHLVCGEDALMLPCLGRTEIDTQKHGPQAISVEDSMSNVHLSAGRNEPISSD LLSEPDIVARIAEATLPDSQIKWRWYVESYDRIRDAISEVFDEFHDFNQRVYQPGGFHLEHPANQHVWNTPKGKAQFLIT PISEVYADKEHQFADTYSKAKVYTLMTTRSHDQYNTTLYGLDDRYRGVFGQRRVLFMNEQDIQEAGFQADQWVDIESIYS DGLKRIVRSFKIVPYNIPRGSMAAYYPETNPLVALSSHDKYAKIPASKSIPVILHPGQAPEHFNLAAPVDPEHANG
Specific function: Probably involved in acid resistance [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787778, Length=762, Percent_Identity=48.2939632545932, Blast_Score=772, Evalue=0.0, Organism=Escherichia coli, GI3868721, Length=370, Percent_Identity=26.4864864864865, Blast_Score=143, Evalue=4e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR010046 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.2.1.2
Molecular weight: Translated: 89018; Mature: 89018
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSRETTTEDNNASYARIEPYDQPAGGWGALLSVARNLKRQETFKKGSISLLNINQPTGF CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC DCPGCAWPEKKDTHTFNFCENGAKAVAFEATSKRVTPEFFATHTVSWLKEQSDFFLEDAG CCCCCCCCCCCCCCEEHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHCCC RITDPMRYDAATDKYVPISWDDAFQLIAKHLQALDHPNEAAFYTSGRTSNEAAFLYQLFV CCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH RNFGTNNFPDCSNMCHEATSVGLKDAIGLGKGTVTLDDFDQADAIFSFGHNPGTNHPRML HHCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCCCHHHCCCCCCCCCCHHHH ATLREVSKRGGTIIAINPLKERGLERFQDPQAPLEMMTNGSTPISRYYFQPKVGGDYAIM HHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCHHHHCCCCCCHHHEEECCCCCCCHHHH FGMLKHLDEWDQINLSKGKPSVFDRDFIALNTVGFEDMLTEIRNTSWSEIHPHTGLTPEH HHHHHHCCCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHH LEALSKLYLESQRAIFCWGMGITQHRHGTVNVHMLANLMLARGHIGRPGAGLAPIRGHSN HHHHHHHHHHCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCC VQGDRTMGINERPGAKMLDSIDRVFGIQSPREDGLGVVETIKAMAEGQVKVFIGLGGNFA CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCEE VATPDSDYTQQALRACKLTVHITTKMNRSHLVCGEDALMLPCLGRTEIDTQKHGPQAISV EECCCCHHHHHHHHHEEEEEEEEEECCCCEEEECCCCEEECCCCCCCCCCCCCCCCEEEE EDSMSNVHLSAGRNEPISSDLLSEPDIVARIAEATLPDSQIKWRWYVESYDRIRDAISEV CCCCCCEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHH FDEFHDFNQRVYQPGGFHLEHPANQHVWNTPKGKAQFLITPISEVYADKEHQFADTYSKA HHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEHHHHHCCCCHHHHHHHCCC KVYTLMTTRSHDQYNTTLYGLDDRYRGVFGQRRVLFMNEQDIQEAGFQADQWVDIESIYS EEEEEEEECCCCCCCCEEEECCHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHH DGLKRIVRSFKIVPYNIPRGSMAAYYPETNPLVALSSHDKYAKIPASKSIPVILHPGQAP HHHHHHHHHCEEEEEECCCCCEEEECCCCCCEEEECCCCCEEECCCCCCCCEEECCCCCC EHFNLAAPVDPEHANG CCCEEECCCCCCCCCC >Mature Secondary Structure MDSRETTTEDNNASYARIEPYDQPAGGWGALLSVARNLKRQETFKKGSISLLNINQPTGF CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC DCPGCAWPEKKDTHTFNFCENGAKAVAFEATSKRVTPEFFATHTVSWLKEQSDFFLEDAG CCCCCCCCCCCCCCEEHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHCCC RITDPMRYDAATDKYVPISWDDAFQLIAKHLQALDHPNEAAFYTSGRTSNEAAFLYQLFV CCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH RNFGTNNFPDCSNMCHEATSVGLKDAIGLGKGTVTLDDFDQADAIFSFGHNPGTNHPRML HHCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCEEEECCCCCCCHHHCCCCCCCCCCHHHH ATLREVSKRGGTIIAINPLKERGLERFQDPQAPLEMMTNGSTPISRYYFQPKVGGDYAIM HHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCHHHHCCCCCCHHHEEECCCCCCCHHHH FGMLKHLDEWDQINLSKGKPSVFDRDFIALNTVGFEDMLTEIRNTSWSEIHPHTGLTPEH HHHHHHCCCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHH LEALSKLYLESQRAIFCWGMGITQHRHGTVNVHMLANLMLARGHIGRPGAGLAPIRGHSN HHHHHHHHHHCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCC VQGDRTMGINERPGAKMLDSIDRVFGIQSPREDGLGVVETIKAMAEGQVKVFIGLGGNFA CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCEE VATPDSDYTQQALRACKLTVHITTKMNRSHLVCGEDALMLPCLGRTEIDTQKHGPQAISV EECCCCHHHHHHHHHEEEEEEEEEECCCCEEEECCCCEEECCCCCCCCCCCCCCCCEEEE EDSMSNVHLSAGRNEPISSDLLSEPDIVARIAEATLPDSQIKWRWYVESYDRIRDAISEV CCCCCCEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHH FDEFHDFNQRVYQPGGFHLEHPANQHVWNTPKGKAQFLITPISEVYADKEHQFADTYSKA HHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEHHHHHCCCCHHHHHHHCCC KVYTLMTTRSHDQYNTTLYGLDDRYRGVFGQRRVLFMNEQDIQEAGFQADQWVDIESIYS EEEEEEEECCCCCCCCEEEECCHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHH DGLKRIVRSFKIVPYNIPRGSMAAYYPETNPLVALSSHDKYAKIPASKSIPVILHPGQAP HHHHHHHHHCEEEEEECCCCCEEEECCCCCCEEEECCCCCEEECCCCCCCCEEECCCCCC EHFNLAAPVDPEHANG CCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: formate; NAD+
Specific reaction: formate + NAD+ = CO2 + NADH
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]